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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctgtctccgccttgaatctccatcagatctgcgcgcgcgctgcctccctagatcagtcctcgagatgtcgatatttttctgccatgtatctca...

Basic information

species Zea mays
transcript GRMZM2G439457_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os01g51220.1 (Oryza sativa), 5'ss of exon 1
---------CTTGAAG-GGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctgtctc------------------cgccttgaatctccatcagatctgcgcgcgcgctgcctccctagatcagtcctcgagatgtcgatatttttctgccatgtatctca
         |  || | |||  ||||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||||    ||| |||                  | |||  |  |||  ||||||||| || ||| | | | ||   |||| || || ||| | | ||| |   |               
GCCACCGCTCCGGAGGAGGGTGGGCAAGATGATCGGCGTCGGGAAGGCGAAGCAGTACGCCAACGTGCTCGACAAGCCCCTCAGCCGCGGCAGGCAGGAGgtactcactggctcgccttccctccccacacacacctccagcctctctcagatctgtgcacgcacgggcccc---gatccgtgctagaggtttagatctcgct---------------

upper sequence: GRMZM2G439457_T02 (Zea mays), 5'ss of exon 2
lower sequence: AT5G58030.1 (Arabidopsis thaliana), 5'ss of exon 1
----------CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctgtctccgccttgaatctccatcagatctgcgcgcgcgctgcctccctagatcagtcctcgagatgtcgatatttttctgccatgtatctca---
             | |    |    || |||||||| || |||||   ||| |||||| ||||||||||||||||||| ||||||   |||| ||| |||||| ||  |  || ||   |  |||  | |      | |     ||  || | |||     | |  |  |     | |  | |         | |  |     
GCTCGTTCTCACCGGAAAACCGAAGAATATGATCGGAGTCGGGAAAATGAAACAGTACTCCAACGTCCTTGACAAGCCTCTCAGCAAAGGCAAGCAAGAGgtacgttttcgctacg---tagatccacttttctcttccaatttcggagctttcctcagaaacttttacactgaactaagtatggaaattgagaacattgttc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211015960|gb|FL234136.1|FL234136
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATKTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167225|gb|FL234175.1|FL234175
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015955|gb|FL234131.1|FL234131
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015954|gb|FL234130.1|FL234130
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165565|gb|FL234161.1|FL234161
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGARTGCATT-GCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015961|gb|FL234137.1|FL234137
EST:     MSAGTAACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAGT-ACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015950|gb|FL234126.1|FL234126
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165560|gb|FL234156.1|FL234156
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211018735|gb|FL234139.1|FL234139
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTNTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAA
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATT-TGCATTCTTGTTCTCTGAGTTGGTTCAGTACAA
EST: gi|211165559|gb|FL234155.1|FL234155
EST:     MSAGTCACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAGT-ACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013169|gb|FL234111.1|FL234111
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165566|gb|FL234162.1|FL234162
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|26558784|gb|CA831019.1|CA831019
EST:     CGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: CGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165562|gb|FL234158.1|FL234158
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|9952789|gb|BE639372.1|BE639372
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013170|gb|FL234112.1|FL234112
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211018736|gb|FL234140.1|FL234140
EST:     -CSAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GC-AGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013167|gb|FL234109.1|FL234109
EST:     A-SAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013180|gb|FL234122.1|FL234122
EST:     AS-AGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167219|gb|FL234169.1|FL234169
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167223|gb|FL234173.1|FL234173
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015951|gb|FL234127.1|FL234127
EST:     AGCAGTACGCCAACGNCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGNACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211010399|gb|FL234105.1|FL234105
EST:     MSSAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013174|gb|FL234116.1|FL234116
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTATGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167227|gb|FL234177.1|FL234177
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015957|gb|FL234133.1|FL234133
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165568|gb|FL234164.1|FL234164
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211018739|gb|FL234143.1|FL234143
EST:     S-AGTTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAGT-ACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167220|gb|FL234170.1|FL234170
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015959|gb|FL234135.1|FL234135
EST:     MSSAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167226|gb|FL234176.1|FL234176
EST:     G-AGTTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAG-TACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211010396|gb|FL234102.1|FL234102
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015953|gb|FL234129.1|FL234129
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165569|gb|FL234165.1|FL234165
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165558|gb|FL234154.1|FL234154
EST:     AMVAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211018743|gb|FL234147.1|FL234147
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167224|gb|FL234174.1|FL234174
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCA
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCA
EST: gi|211165561|gb|FL234157.1|FL234157
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|71424453|gb|DR806315.1|DR806315
EST:     AGCAGTACGCCACCGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|22472973|gb|BU037453.1|BU037453
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013172|gb|FL234114.1|FL234114
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211018741|gb|FL234145.1|FL234145
EST:     -MAGTCACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAGT-ACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211018745|gb|FL234149.1|FL234149
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167221|gb|FL234171.1|FL234171
EST:     MSSAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211010393|gb|FL234099.1|FL234099
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165571|gb|FL234167.1|FL234167
EST:     -CAGTTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTGTGTTCTCTGAGTTGGTTCAGTACAA
genomic: GCAGT-ACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCT-TGTTCTCTGAGTTGGTTCAGTACAA
EST: gi|211010395|gb|FL234101.1|FL234101
EST:     MSAGTTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAG-TACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013168|gb|FL234110.1|FL234110
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167218|gb|FL234168.1|FL234168
EST:     AGCAGTACGCCAACGTCCTTTACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211010392|gb|FL234098.1|FL234098
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211018747|gb|FL234151.1|FL234151
EST:     AMSAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015949|gb|FL234125.1|FL234125
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165564|gb|FL234160.1|FL234160
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|21432154|gb|BQ547644.1|BQ547644
EST:     GCAGTACGCCAACGTCCTTGACAAGCCCCTCATCTCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAGTACGCCAACGTCCTTGACAAGCCCCTCAGC-CGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211167222|gb|FL234172.1|FL234172
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211165563|gb|FL234159.1|FL234159
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013177|gb|FL234119.1|FL234119
EST:     V-AGTTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAGT-ACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211010394|gb|FL234100.1|FL234100
EST:     MSAGTNACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: GCAGT-ACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211010401|gb|FL234107.1|FL234107
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATT-GCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015947|gb|FL234123.1|FL234123
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015958|gb|FL234134.1|FL234134
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211015956|gb|FL234132.1|FL234132
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGYGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211013176|gb|FL234118.1|FL234118
EST:     AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: AGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
EST: gi|211018734|gb|FL234138.1|FL234138
EST:     CG-AGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG                         GTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC
genomic: -GCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAAC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 111

CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAACCAGACTCAAGTTGACAACATTACTGAGCTGGAACGGAG


Block sizes: 48 (upstream exon), 47 (downstream exon)
Score: 115

CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAACCAGACTCAAGTTGACAACATTACTGAGCTGGAACGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 81

CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAACCAGACTCAAGTTGACAACATTACTGAGCTGGAACGGAG


Block sizes: 49 (upstream exon), 47 (downstream exon)
Score: 75

CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctg ... cctattgtagGTCAGTTTGAGTGCATTTGCATTCTTGTTCTCTGAGTTGGTTCAGTACAACCAGACTCAAGTTGACAACATTACTGAGCTGGAACGGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAGgtatgtgctgtctccgccttgaatctccatcagatctgcgcgcgcgctgcctccctagatcagtcctcgagatgtcgatatttttctgccatgtatctca

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctccgcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gctgcctc