Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGGTCCCTCAACTTCCCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatatatatacatacacacaatctccctgtcctgatcttcaggcctctttgattgttgccaattgaactttctatttctttttctgttcgttgaggatgatattgattccttcatgcgcgtgtcgctgttcttgcttcgcgcag

Basic information

species Zea mays
transcript GRMZM2G471269_T05
intron # 12
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|88748263|gb|DY532404.1|DY532404
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|37392581|gb|CF633542.1|CF633542
EST:     TGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACCACATGACGTTCGCGACGATCAAA
genomic: TGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|78111058|gb|DV529455.1|DV529455
EST:     CCCGTTGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|116827409|gb|EC871310.1|EC871310
EST:     GGCG-GGCATCTC-GTGGCC-AG-CGCCGG                         G-TCACGATAAATTACTCAAAC-ACATGACGTTCGCGACGATCAAA
genomic: GGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|110533510|gb|EE037690.1|EE037690
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|211272707|gb|FL458993.1|FL458993
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTTGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|88750452|gb|DY534593.1|DY534593
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|16919289|gb|BM074120.1|BM074120
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|111145649|gb|EE257973.1|EE257973
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|78027468|gb|DV495855.1|DV495855
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|86468083|gb|DY234453.1|DY234453
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|110516814|gb|EE021401.1|EE021401
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|5108189|gb|AI739902.1|AI739902
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
EST: gi|211175969|gb|FL481229.1|FL481229
EST:     CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGG                         GTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA
genomic: CCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatat ... cttcgcgcagGTTCACGATAAATTACTCAAACAACATGACGTTCGCGACGATCAAA

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
TGCTGGTGCCACACCTGGGCACCCAGGCATGGGTCAGGTCCCTCAACTTCCCCGTCGTCGACGACTGGAGGGCGTGGCATCTCGGTGGCCAAGCCGCCGGgtgggtatatatatacatacacacaatctccctgtcctgatcttcaggcctctttgattgttgccaattgaactttctatttctttttctgttcgttgaggatgatattgattccttcatgcgcgtgtcgctgttcttgcttcgcgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  TGGAGG