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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCCCACCTTCGATCGGCACGCAGGCTCGGCGTCGTCGTCAGCGGTTCCTCCTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcctcccgctctcctatcccctcggtggaccgtcaacgacgcctggccccgtcggctgcgctgcgcggctggagtgcaccgggagctagttgcc...

Basic information

species Zea mays
transcript GRMZM2G439457_T01
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211015960|gb|FL234136.1|FL234136
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167225|gb|FL234175.1|FL234175
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015955|gb|FL234131.1|FL234131
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015954|gb|FL234130.1|FL234130
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165565|gb|FL234161.1|FL234161
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015961|gb|FL234137.1|FL234137
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGSSACCCTGC                         CTTGAAGGGGMTGGCAAGATGATCGGCGTAGGGAAGGCG-AMSAGTAACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGT-ACGC
EST: gi|211015950|gb|FL234126.1|FL234126
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165560|gb|FL234156.1|FL234156
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211018735|gb|FL234139.1|FL234139
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165559|gb|FL234155.1|FL234155
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACT-G-SACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCG-AMSAGTCACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGT-ACGC
EST: gi|211013169|gb|FL234111.1|FL234111
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165566|gb|FL234162.1|FL234162
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165562|gb|FL234158.1|FL234158
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|9952789|gb|BE639372.1|BE639372
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211013170|gb|FL234112.1|FL234112
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211018736|gb|FL234140.1|FL234140
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGG-SACCCTGC                         CTTGAAGGGGCTKGCAAGATGATCGGCGTAGGGAAGGCGAA-CSAGTACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGC-AGTACGC
EST: gi|211013167|gb|FL234109.1|FL234109
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGG-SACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAA-SAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015948|gb|FL234124.1|FL234124
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGNCGTAGGGAAGGCGAAGCAGTACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGG-CGTAGGGAAGGCGAAGCAGTACGC
EST: gi|211013180|gb|FL234122.1|FL234122
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAS-AGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167219|gb|FL234169.1|FL234169
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211013173|gb|FL234115.1|FL234115
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167223|gb|FL234173.1|FL234173
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015951|gb|FL234127.1|FL234127
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211010399|gb|FL234105.1|FL234105
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGSSACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAMSSAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211013174|gb|FL234116.1|FL234116
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167227|gb|FL234177.1|FL234177
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015957|gb|FL234133.1|FL234133
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165568|gb|FL234164.1|FL234164
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211018739|gb|FL234143.1|FL234143
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGSSACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAMS-AGTTACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGT-ACGC
EST: gi|211167220|gb|FL234170.1|FL234170
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015959|gb|FL234135.1|FL234135
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGSSACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAMSSAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167226|gb|FL234176.1|FL234176
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGC-ACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAMG-AGTTACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAG-TACGC
EST: gi|211010396|gb|FL234102.1|FL234102
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015953|gb|FL234129.1|FL234129
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165569|gb|FL234165.1|FL234165
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165558|gb|FL234154.1|FL234154
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACT-G-GACCC-CC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCG-AMVAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211018743|gb|FL234147.1|FL234147
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167224|gb|FL234174.1|FL234174
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165561|gb|FL234157.1|FL234157
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|71424453|gb|DR806315.1|DR806315
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|22472973|gb|BU037453.1|BU037453
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211013172|gb|FL234114.1|FL234114
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|116829077|gb|EC864067.1|EC864067
EST:     TCCCGACCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAATACGCC
genomic: TCCCG-CCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211018741|gb|FL234145.1|FL234145
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGG-SACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCG-A-MAGTCACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGT-ACGC
EST: gi|211018745|gb|FL234149.1|FL234149
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167221|gb|FL234171.1|FL234171
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGSSACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAMSSAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211010393|gb|FL234099.1|FL234099
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165571|gb|FL234167.1|FL234167
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGS-ACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAM-CAGTTACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGT-ACGC
EST: gi|211010395|gb|FL234101.1|FL234101
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGG-SACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCG-AMSAGTTACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAG-TACGC
EST: gi|211013168|gb|FL234110.1|FL234110
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167218|gb|FL234168.1|FL234168
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211010392|gb|FL234098.1|FL234098
EST:     CTCCCTCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211018747|gb|FL234151.1|FL234151
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGG-SACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCG-AMSAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015949|gb|FL234125.1|FL234125
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165564|gb|FL234160.1|FL234160
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|21432154|gb|BQ547644.1|BQ547644
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211167222|gb|FL234172.1|FL234172
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165563|gb|FL234159.1|FL234159
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211013177|gb|FL234119.1|FL234119
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGS-ACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAMV-AGTTACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGT-ACGC
EST: gi|211010394|gb|FL234100.1|FL234100
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGG-SACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCG-AMSAGTNACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGT-ACGC
EST: gi|211010401|gb|FL234107.1|FL234107
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015947|gb|FL234123.1|FL234123
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015958|gb|FL234134.1|FL234134
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211015956|gb|FL234132.1|FL234132
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211165567|gb|FL234163.1|FL234163
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGAT
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGAT
EST: gi|211013176|gb|FL234118.1|FL234118
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCC
EST: gi|211018734|gb|FL234138.1|FL234138
EST:     CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGG-SACCCTGC                         CTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAACG-AGTACGC
genomic: CTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAA-GCAGTACGC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 315

CCCCACCTTCGATCGGCACGCAGGCTCGGCGTCGTCGTCAGCGGTTCCTCCTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 149

CCCCACCTTCGATCGGCACGCAGGCTCGGCGTCGTCGTCAGCGGTTCCTCCTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 92

CCCCACCTTCGATCGGCACGCAGGCTCGGCGTCGTCGTCAGCGGTTCCTCCTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 220

CCCCACCTTCGATCGGCACGCAGGCTCGGCGTCGTCGTCAGCGGTTCCTCCTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcct ... ttatctgcagCTTGAAGGGGCTGGCAAGATGATCGGCGTAGGGAAGGCGAAGCAGTACGCCAACGTCCTTGACAAGCCCCTCAGCCGTGGCAGGCAGGAG


Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CCCCACCTTCGATCGGCACGCAGGCTCGGCGTCGTCGTCAGCGGTTCCTCCTCCCGCCTCTCGCCAGTAGCCTCGCGCCCTCGCCGACTGGCGACCCTGCgtgcgtgcctcccgctctcctatcccctcggtggaccgtcaacgacgcctggccccgtcggctgcgctgcgcggctggagtgcaccgggagctagttgcc

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctcccgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cccctcgg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccgtc