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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCGGTGCCGGTGCCATTGGCAGCTTGTGCGACGAAGCAGTTCTGGAAGGCTGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGTGGCTCAGCAGTCAGgtaccatcctgacactaaaacccttctgcattctatttctgtttcattaatagttttcctattgaagaattcgagggcagtttagttctttaatttggaa...

Basic information

species Zea mays
transcript GRMZM2G161087_T02
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78121690|gb|DV540074.1|DV540074
EST:     TGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGTGGCTCAGCAGTCAG                         TCTCTGGAATGGATCATGTTCGCGTGCACCCTAGATTTCTGCACTCAAACG
genomic: TGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGTGGCTCAGCAGTCAGgtaccatcct ... ctcatttcagTCTCTGGAATGGATCATGTTCGCGTGCACCCTAGATTTCTGCACTCAAACG
EST: gi|71772592|gb|DR970521.1|DR970521
EST:     TGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGTGGCTCAGCAGTCAG                         TCTCTGGAATGGATCATGTTCGCGTGCACCCTAGATTTCTGCACTCAAACG
genomic: TGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGTGGCTCAGCAGTCAGgtaccatcct ... ctcatttcagTCTCTGGAATGGATCATGTTCGCGTGCACCCTAGATTTCTGCACTCAAACG
EST: gi|211002749|gb|FL375709.1|FL375709
EST:     TGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGTGGCTCAGCAGTCAG                         TCTCTGGAATGGATCATGTTCGCGTGCACCCTANATTTCTGCACTCAAACG
genomic: TGGGGACTACGACGGAAAGCCGCTCGGTGATGGGGTGGCTCAGCAGTCAGgtaccatcct ... ctcatttcagTCTCTGGAATGGATCATGTTCGCGTGCACCCTAGATTTCTGCACTCAAACG