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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CGCTTGCGGACGGCGACGACGTGGTGGCCCTTACCGAATCCACGTTCGAGAAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctcgctccctttgttctctaccacgctggattgtatttcgatagatcgtacgggaatgcgggactagatctgtggactgtggttggggttact...

Basic information

species Zea mays
transcript GRMZM2G128171_T04
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G128171_T03 (Zea mays), 5'ss of exon 1
lower sequence: LOC_Os01g23740.1 (Oryza sativa), 5'ss of exon 1
CGCTTGCGGACGGCGACGACGTGGTGGCCCTTACCGAATCCACGTTCGAGAAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctcgctccctttgt-tctctaccacgctggattgtatttcgatagatcgta-cgggaatgcgggactagatctgtggactgtggttggggttact
|| | || |||||||||||||| || ||||| || || ||||| |||||||||||||||||  ||||||||||||||||||||||||||||||| |||||||| |  ||||  |||||||| || | |   | |||  |   |||  | | |||||   ||||   |   |  |   | |||||   |||  | | | | | 
CGTTCGCCGACGGCGACGACGTCGTCGCCCTCACGGAGTCCACCTTCGAGAAGGAGGTCGGCCAGGACCGCGGCGCCCTCGTCGAGTTCTACGCGCCCTGgttcgttctcgtcccctttgtctcgccagatccctgcgta--attcggctggatcgggtcgggtcggatcggatccgtgtgtgggtcgtgaatagtgatgcg
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211244865|gb|FL145185.1|FL145185
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211242633|gb|FL145173.1|FL145173
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247099|gb|FL145197.1|FL145197
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249334|gb|FL145212.1|FL145212
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211242622|gb|FL145162.1|FL145162
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247104|gb|FL145202.1|FL145202
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211244855|gb|FL145175.1|FL145175
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247098|gb|FL145196.1|FL145196
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|32805924|gb|CD958158.1|CD958158
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249335|gb|FL145213.1|FL145213
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAA
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAA-GAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAA
EST: gi|211244858|gb|FL145178.1|FL145178
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211242621|gb|FL145161.1|FL145161
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211242632|gb|FL145172.1|FL145172
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249340|gb|FL145218.1|FL145218
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249327|gb|FL145205.1|FL145205
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAARAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211251556|gb|FL145219.1|FL145219
EST:     AAGGAGGTCGRAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247097|gb|FL145195.1|FL145195
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249328|gb|FL145206.1|FL145206
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247101|gb|FL145199.1|FL145199
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211251557|gb|FL145220.1|FL145220
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211242629|gb|FL145169.1|FL145169
EST:     AAGGAGRTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249333|gb|FL145211.1|FL145211
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249326|gb|FL145204.1|FL145204
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249332|gb|FL145210.1|FL145210
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247093|gb|FL145191.1|FL145191
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249331|gb|FL145209.1|FL145209
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249330|gb|FL145208.1|FL145208
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249337|gb|FL145215.1|FL145215
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTA--AA-GACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211242623|gb|FL145163.1|FL145163
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAG
EST: gi|211242628|gb|FL145168.1|FL145168
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211244860|gb|FL145180.1|FL145180
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247100|gb|FL145198.1|FL145198
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTAGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|78117464|gb|DV535851.1|DV535851
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211249329|gb|FL145207.1|FL145207
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247094|gb|FL145192.1|FL145192
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGARAGACTTNGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211251558|gb|FL145221.1|FL145221
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247092|gb|FL145190.1|FL145190
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211247105|gb|FL145203.1|FL145203
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211244862|gb|FL145182.1|FL145182
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211244863|gb|FL145183.1|FL145183
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211244868|gb|FL145188.1|FL145188
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG
EST: gi|211244856|gb|FL145176.1|FL145176
EST:     AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTG                         GTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATRAAAGACTTGGTGCAAG
genomic: AAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctc ... gtttgtttagGTGTGGTCACTGCAAGAAGCTTGCTCCTGAGTATGAAAGACTTGGTGCAAG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
CGCTTGCGGACGGCGACGACGTGGTGGCCCTTACCGAATCCACGTTCGAGAAGGAGGTCGGAAAGGACCGCGGCGCCCTCGTCGAGTTCTACGCCCCCTGgtttgagctcgctccctttgttctctaccacgctggattgtatttcgatagatcgtacgggaatgcgggactagatctgtggactgtggttggggttact

- - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG