1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TTACAACCGGCTCAGGCCTCTGAGCTATCGTGGTGCTGATGTTTTCGTGCTTGCCTTCTCTCTTGTGAGCCGAGCTAGCTATGAAAATATTATGAAGAAGgtactgaatgtgccattttgacttcttggacttgtccttgcggtatatttttgtttgtttgaaaatactaagatatgtgtattttgtgtgctttgttcttccctttcag
species | Oryza sativa |
transcript | LOC_Os02g50860.1 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TTGCCTTCTCTCTTGTGAGCCGAGCTAGCTATGAAAATATTATGAAGAAG TGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTEST: gi|163928524|gb|EG711409.1|EG711409
genomic: TTGCCTTCTCTCTTGTGAGCCGAGCTAGCTATGAAAATATTATGAAGAAGgtactgaatg ... tccctttcagTGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTT
EST: TTGCCTTCTCTCTTGTGAGCCGAGCTAGCTATGAAAATATTATGAAGAAG TGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTTEST: gi|33815650|gb|CF333676.1|CF333676
genomic: TTGCCTTCTCTCTTGTGAGCCGAGCTAGCTATGAAAATATTATGAAGAAGgtactgaatg ... tccctttcagTGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTT
EST: TTGCCTTCTCTCTTGTGAGCCGAGCTAGCTATGAAAATATTATGAAGAAG TGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGGTEST: gi|86495788|gb|CI138421.1|CI138421
genomic: TTGCCTTCTCTCTTGTGAGCCGAGCTAGCTATGAAAATATTATGAAGAAGgtactgaatg ... tccctttcagTGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGG-T
EST: AAAATATTATGAAGAAG TGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTT
genomic: AAAATATTATGAAGAAGgtactgaatg ... tccctttcagTGGATACCGGAGCTACAGCATTATGCACCCGGCGTGCCCATTGTGTTGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTACAACCGGCTCAGGCCTCTGAGCTATCGTGGTGCTGATGTTTTCGTGCTTGCCTTCTCTCTTGTGAGCCGAGCTAGCTATGAAAATATTATGAAGAAGgtactgaatgtgccattttgacttcttggacttgtccttgcggtatatttttgtttgtttgaaaatactaagatatgtgtattttgtgtgctttgttcttccctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG