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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTGCAATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgcttatttatacatctgagtgcctttgtctatgattttgactgactaaacagggatcaattgaacaatgttattttcttgatcacttatatctgaggtgtgttctgatggcttagtgaaatcattatag

Basic information

species Glycine max
transcript GLYMA20G31980.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv06s0004g02960.t01 (Vitis vinifera), 5'ss of exon 9
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTGCAATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaacttgcttatttatacatctgagtgcctttgtctatgattttgactgactaaacagggatc--aattgaacaatgttattttcttgatcacttatatctgaggtgtgttctgatggcttagtgaaatcattatag
|| ||||||||||| ||  | |||||||||||| | ||||| | |||||| |||||| |||||||| | |  |||||| ||||||| ||||| |||||||||| |  || | | || |            ||   | | | ||  |     ||  |  ||| |  | ||  |   |||||||| || || |||           ||  || |    |||||| |        |||| ||  ||
CTTGGTTCACCAGTTTTCAATAAACTTGAAGCTCAACTGGCCAGAGCTGCCATGTCACTGCCTGCATCGATAGGCTTTGAGTTTGGCAGTGGCTTTGCAGgta-tggaattggtttgtc-----------gtatttgt-tttaaaaaacccaccaaaaaaaaaaagttctaaggagaacaatgatacttacttt----------tccaagct----tctgattgtcattgagaatccttgcag

upper sequence: GLYMA20G31980.1 (Glycine max), 5'ss of exon 9
lower sequence: Vv13s0019g04190.t01 (Vitis vinifera), 5'ss of exon 9
CTCGGTTCACCAGTATTTGACAAACTTGAAGCTGAGCTGGCTAAAGCTGCAATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaactt--gcttatttatacatctgagtgcctttg---tctatgattttgactgactaaacagg--gatcaattgaa---caatgttat-----tttcttgatcacttatatctgaggtgtgttct--gatggcttagtgaaatcattatag-------------
|| || |||||||| ||||| ||||||||||||||| |||||||||||||  ||||||| |||||||| ||||||||| | ||||| ||||| ||||||||||   ||||||  | |  ||| |   | |   | |||      | |   |||| |  ||  |||  ||   ||| | |||||   ||||  |||     ||   |  ||| |  |   |||  |   ||||  | |   |      | | || || |             
CTTGGATCACCAGTCTTTGATAAACTTGAAGCTGAGTTGGCTAAAGCTGCTTTGTCATTACCTGCAACAAAGGGCTTTGAATTTGGCAGTGGTTTTGCAGgtagagaaacttttggtgctttttggttatattttcctccaaaattttaaatttggggtggataactagattgattatttgaattgcaattatatgcatcttatgttgtcattcttccttgatattatttctttgttatttccaactatttatcattggaagttcctgcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|58017502|gb|CX704244.1|CX704244
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... atcattatagGCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
EST: gi|23052733|gb|BU577224.1|BU577224
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... atcattatagGCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
EST: gi|16346555|gb|BI972150.1|BI972150
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAA
genomic: AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... atcattatagGCACCTTTTTGACTGGGAGTGAA
EST: gi|120533980|gb|EH262113.1|EH262113
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... atcattatagGCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
EST: gi|19934393|gb|BQ079423.1|BQ079423
EST:     AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: AATGTCATTGCCTGCAACCAAGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... atcattatagGCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
EST: gi|254340229|gb|GR858354.1|GR858354
EST:     AGGGCTTTCAGTTTGGTAGTGGGTTTGCAG                         GCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC
genomic: AGGGCTTTCAGTTTGGTAGTGGGTTTGCAGgtactaaaac ... atcattatagGCACCTTTTTGACTGGGAGTGAACACAATGATGAGTTCTATATAGATGAAC