1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgttgcattgttttataactttagtttaaatgcacctgccaaaagtgaacatgaatcattggtgcttccaatattacag
species | Glycine max |
transcript | GLYMA08G19660.1 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: GATGGAACCTTCTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTTGTTGTTTGGTGAGGAAGGAAAGCCEST: gi|192328848|gb|FK022592.1|FK022592
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTT-GTTGTTTG-TGAGGAAGGAAAGCC
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|151393611|gb|EV263486.1|EV263486
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTCTGTGAGGAAGGAAAGCCTTEST: gi|24206192|gb|BU965445.1|BU965445
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|151393020|gb|EV262895.1|EV262895
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAAGAAAGCCTTEST: gi|5677852|gb|AI938982.1|AI938982
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: ATGGAACCTTATCTCAGGAAGCAATGCATGGCCTGTGCG-TTAAATAAAT GAGTTGTGGAGCTTEST: gi|192302607|gb|FG994873.1|FG994873
genomic: ATGGAACCTTTTCTCAGGAAGCAAGGCATG-CCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|7147014|gb|AW508936.1|AW508936
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGGTTCGGATTTTGTTGTTTGTGAGGAAAGAAAGCCTTEST: gi|22932190|gb|BU549329.1|BU549329
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|58018160|gb|CX704902.1|CX704902
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|192302608|gb|FG994874.1|FG994874
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTTTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|192301600|gb|FG994784.1|FG994784
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAAGAAAGCCTTEST: gi|14990628|gb|BI316301.1|BI316301
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCATGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAAGAAAGCCTTEST: gi|17153605|gb|BM143538.1|BM143538
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|192297638|gb|FG989931.1|FG989931
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|14126392|gb|BG790830.1|BG790830
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|151397245|gb|EV267118.1|EV267118
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTCTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTCGTTGTTTGTGAGGAAGGAAAGCCTTEST: gi|193532401|gb|FK489687.1|FK489687
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAAGCCTT
EST: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAG GAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAA
genomic: GATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgtt ... aatattacagGAGTTGTGGAGCTTGTTTCGGATTTTGTTGTTTGTGAGGAAGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTGGATCTCAAAGAGGGTCCATTAGAGCAATTCACCCATGAGATGGAACCTTTTCTCAGGAAGCAAGGCATGCCTGTTCGGTTAAATAAAGgtactctgttgcattgttttataactttagtttaaatgcacctgccaaaagtgaacatgaatcattggtgcttccaatattacag
- - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG