1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
GAAGCATTATGTGAGCTTTCCAAACAATTGGCAAAACCTGCTTTGCCTGGTGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAGgtatgctcaaagaaaatatttattatgaatttgcttgtgtcatagttccgtatgtcctgttttactcccttttagtttaattctgatgcaatggcaagtg...
species | Glycine max |
transcript | GLYMA11G37040.1 |
intron # | 4 |
splice site | 5' |
intron type | U2 |
EST: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAG GGGACACATCGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCEST: gi|6071440|gb|AW100827.1|AW100827
genomic: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAGgtatgctcaa ... attattccagGGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGC
EST: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAG GGGACACATTGNGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCEST: gi|192299837|gb|FG990074.1|FG990074
genomic: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAGgtatgctcaa ... attattccagGGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGC
EST: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAG GG-ACACATTGG-TGGCCACCTTGATGACATGGA-GCAGATEST: gi|209717977|gb|BW671806.1|BW671806
genomic: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAGgtatgctcaa ... attattccagGGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGAT
EST: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAG GGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGCEST: gi|209712172|gb|BW681378.1|BW681378
genomic: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAGgtatgctcaa ... attattccagGGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGC
EST: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAG GGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGC
genomic: TGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAGgtatgctcaa ... attattccagGGGACACATTGGGTGGCCACCTTGATGACATGGAAGCAGATTGGAGCAAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAAGCATTATGTGAGCTTTCCAAACAATTGGCAAAACCTGCTTTGCCTGGTGGTGTTGAGTTCAGACCTGATGCTGCAATAGTGAATTACTTCGGCCTAGgtatgctcaaagaaaatatttattatgaatttgcttgtgtcatagttccgtatgtcctgttttactcccttttagtttaattctgatgcaatggcaagtg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaagaaaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctccctt