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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTAATGGGCAGTTTCCAGGGCCTCAAATAGATGCTGTTACAAATGACAACTTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattcttgtatcttattcctaactgcattgctgtgtttttgtttctttaactcttgtcctggaaccatgcctttttataaaaattgtatttggcgga...

Basic information

species Glycine max
transcript GLYMA17G01580.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|9204473|gb|BE330697.1|BE330697
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
EST: gi|15815174|gb|BI787449.1|BI787449
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
EST: gi|16997237|gb|BM086609.1|BM086609
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
EST: gi|7588537|gb|AW704260.1|AW704260
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
EST: gi|213598785|gb|DB968256.1|DB968256
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
EST: gi|213618027|gb|DB963660.1|DB963660
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGC
EST: gi|23727663|gb|BU761864.1|BU761864
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
EST: gi|193347125|gb|FK310211.1|FK310211
EST:     TGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCAATG                         GAATGGCTTAC
genomic: TGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCA-TGgtacattctt ... tcttctgcagGAATGGCTTAC
EST: gi|23727856|gb|BU761964.1|BU761964
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
EST: gi|7926178|gb|AW832204.1|AW832204
EST:     TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATG                         GAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC
genomic: TTGATTATCAATGTCTATAACTACCTCAGAGAACCGTTCCTCATTTCATGgtacattctt ... tcttctgcagGAATGGCTTACAGCATAGGAGGAACTCATGGCAGGATGGAGTGTATGGCAC