1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
GGCGGTGCAGCAGGCGCGCGCTCGTGCCATGGAGGACGCCAGCGCCGTGCGCAAGGAACTGCAGGACCAGCTCAACATGGAGGAGAGCAAGGCCTTACAGgtgagggcgcgctgccccaaacttgggcactaccgtatcttcctcgttactgcccatccagatactgggcatcacactccgaccgcatcacccatccgcg...
species | Chlamydomonas reinhardtii |
transcript | EDP05785 |
intron # | 5 |
splice site | 5' |
intron type | U2 |
EST: AACATGGAGGAGAGCAAGGCCTTACAG GCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCCEST: gi|9460290|gb|BE453158.1|BE453158
genomic: AACATGGAGGAGAGCAAGGCCTTACAGgtgagggcgc ... accctaacagGCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCC
EST: GCAAGGCCTTACAG GCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCCEST: gi|8287200|gb|BE024759.1|BE024759
genomic: GCAAGGCCTTACAGgtgagggcgc ... accctaacagGCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCC
EST: GCAAGGAACTGCAGGACCAGCTCAACATGGAGGAGAGCAAGGCCTTACAG GCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCCEST: gi|10126239|gb|BE724943.1|BE724943
genomic: GCAAGGAACTGCAGGACCAGCTCAACATGGAGGAGAGCAAGGCCTTACAGgtgagggcgc ... accctaacagGCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCC
EST: GCAAGGAACTGCAGGACCAGCTCAACATGGAGGAGAGCAAGGCCTTACAG GCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCCEST: gi|161790024|gb|FC077147.1|FC077147
genomic: GCAAGGAACTGCAGGACCAGCTCAACATGGAGGAGAGCAAGGCCTTACAGgtgagggcgc ... accctaacagGCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCC
EST: GCAAGGAACTGCAGGACCAGCTCAACATGGAGGAGAGCAAGGCCTTACAG GCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCC
genomic: GCAAGGAACTGCAGGACCAGCTCAACATGGAGGAGAGCAAGGCCTTACAGgtgagggcgc ... accctaacagGCCGAGGCGCGCTGCCAGGCCGCTGAGCAGGAAATCCAGACGTGCAAGGCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGCGGTGCAGCAGGCGCGCGCTCGTGCCATGGAGGACGCCAGCGCCGTGCGCAAGGAACTGCAGGACCAGCTCAACATGGAGGAGAGCAAGGCCTTACAGgtgagggcgcgctgccccaaacttgggcactaccgtatcttcctcgttactgcccatccagatactgggcatcacactccgaccgcatcacccatccgcg
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -caaactt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -cgtatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cagatac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgggcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacactc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - cacccat