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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCAGCAGCCACACGGAGATGATGCAGACGTTGGTGCTGGGCTCCATGTTCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgcccgacccacatcacaactcacaagcccagcctcccaacccctctcacacacgcccaccggggcccccggccacctggaaaatccacctcagcaggctttaaccaaccctctatttctgtttccttgcacttgcacag

Basic information

species Chlamydomonas reinhardtii
transcript EDP02676
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EDP02676 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: GRMZM2G174107_T01 (Zea mays), 5'ss of exon 1
-GCAGCAGCCACACG-GAGATGATGCAGACGTTGGTGCTGGGCTCCATGTTCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgcccgacccacatcacaactcacaagcccagcctcccaacccctctcacacacgcccaccggggcccccggccacctggaaaatccacctcagcaggctttaaccaaccctctatttctgtttccttgcacttgcacag
 || | ||    | | | | | ||| ||||| ||  ||| |||||  | ||||    |||||||     |||||||  ||||||||||||||||||||||||   |  ||   |   |       | |||   |     ||   |    | |       |   | | |     | |   |     | | |  | ||    | | |                                        
GGCGGAAGAAGGAGGCGGGCTCATGAAGACGCTGTGGCTCGGCTCGCTCTTCGGCCTCTGGTACCTGTTCAACATCTACTTCAACATCTATAACAAGCAGgtgagtatcctgacgtgagattgggtgacagagcg---ttcgggatatgttttttttgtgtgtatctgaatatctgattatt---agattttatcttgagatggta---------------------------------------

upper sequence: EDP02676 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: EFJ27053 (Selaginella moellendorffii), 5'ss of exon 1
GCAGCAGCC--ACACGGAGATGATGCAGACGTTGGTGCTGGGCTCCATGTTCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgcccgacccacatcacaactcacaagcccagcctcccaacccctctcacacacgcccaccggggcccccggccacctggaaaatccacctcagcaggctttaaccaaccctctatttctgtttccttgcacttgcacag
|||  |  |   ||  | ||||||||  ||  |   |||||| ||  | ||||     ||||||     |||||||  ||||||||||||||||||||||| | |    |  | |   |  |   || | | |  ||| |   | |  ||||      |  |||     ||  |   | | || |||  |     |   |||                                           
GCAAGAATCCGGCAGCGCGATGATGCGCACACTCCAGCTGGGATCGCTCTTCGGATTGTGGTACCTCTTCAACATCTACTTCAACATCTATAACAAGCAGgcattgtttcttctcgt-tttcttttctccaccttagc-taggatcttctcttgttttc-tccatgcatgctactttctaactagaacttgtgatttctcag-------------------------------------------

upper sequence: EDP02676 (Chlamydomonas reinhardtii), 5'ss of exon 2
lower sequence: EFJ05868 (Selaginella moellendorffii), 5'ss of exon 1
GCAGCAGCC--ACACGGAGATGATGCAGACGTTGGTGCTGGGCTCCATGTTCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgcccgacccacatcacaactcacaagcccagcctcccaacccctctcacacacgcccaccggggcccccggccacctggaaaatccacctcagcaggctttaaccaaccctctatttctgtttccttgcacttgcacag
|||  |  |   ||  | ||||||||  ||| |   |||||| ||  | ||||     ||||||     |||||||  ||||||||||||||||||||||| | |    |  | |   |  |   || | | |  ||| |   | |   |||      |  |||     ||  |   | | || |||  |    |||||                                              
GCAAGAATCCGGCAGCGCGATGATGCGCACGCTCCAGCTGGGATCGCTCTTCGGATTGTGGTACCTCTTCAACATCTACTTCAACATCTATAACAAGCAGgcattgtttcttctcgt-tttcttttctccaccatagc-taggatcttttcttgttttc-tccatgcatgctactttctaactagaacttatttctcag----------------------------------------------

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10126790|gb|BE725494.1|BE725494
EST:     TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG                         CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
EST: gi|22061866|gb|BQ814504.1|BQ814504
EST:     TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG                         CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
EST: gi|49463747|gb|BP091660.1|BP091660
EST:     TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG                         CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTC
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTC
EST: gi|14237626|gb|BG856442.1|BG856442
EST:     TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG                         CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
EST: gi|8514072|gb|BE121967.1|BE121967
EST:     TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAG                         CTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG
genomic: TCGCGGGCTGGTACGCAGCCAACATCGCCTTCAACATCTATAACAAGCAGgtacttgccc ... acttgcacagCTGCTCAAGGCGTTTGCCTTCCCGCTCACCATCACGGAGGCGCAGTTCCTG