1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TCTTGCTGTGGGAAAGGTCGATCCATTGCACCCAGATTTGATGGTTGATCCTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTGgtaattatctttcccaaaaatggaaaacagatgcacagaatcgtgaaaggcagacttcaattttaattagaatggcaacatatgcgtagacatcatacctttgtgaccattgcag
species | Arabidopsis thaliana |
transcript | AT3G58560.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTG GTTAGTGCCTACTCACAATTTGCAAAAATGGGAEST: gi|116428969|gb|EG471561.1|EG471561
genomic: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTGgtaattatct ... accattgcagGTTAGTGCCTACTCACAATTTGCAAAAATGGGA
EST: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTG GTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAGEST: gi|86059624|gb|DR355381.1|DR355381
genomic: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTGgtaattatct ... accattgcagGTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAG
EST: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTG GTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAG
genomic: CTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTGgtaattatct ... accattgcagGTTAGTGCCTACTCACAATTTGCAAAAATGGGAGGCAACGTTATTACTGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTTGCTGTGGGAAAGGTCGATCCATTGCACCCAGATTTGATGGTTGATCCTCTTGGAATTTTACGTCCTCACAGCAAGCTTACTCATCAGCTGCCACTGgtaattatctttcccaaaaatggaaaacagatgcacagaatcgtgaaaggcagacttcaattttaattagaatggcaacatatgcgtagacatcatacctttgtgaccattgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC