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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTGTATGGATGAGATCTATGATAAGTTGGCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAAgtaagtttgctactctttaaatgttgttctgttctgttagctgcacccgagtttttagataactcctatgaattgtgtgttgactcgtgtag

Basic information

species Arabidopsis thaliana
transcript AT1G03030.1
intron # 4
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: AT1G03030.1 (Arabidopsis thaliana), 5'ss of exon 4
lower sequence: Vv07s0141g00310.t01 (Vitis vinifera), 5'ss of exon 4
TTGTATGGATGAGATCTATGATAAGTTGGCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAAgtaagtttgctactctttaaatgttgttctgttctgttagctgcacccgagtttttagataactcctatgaattgtgtgttgactcgtgtag---------
 |||||||||||||| |||||||  ||||| ||||||||| | ||||| ||||| | |   |  |  || ||| | |||||||||     ||  || | |   |   | || |  ||  |         |    | ||||  | |   |  | ||   || |      |          
GTGTATGGATGAGATATATGATACTTTGGCTGAACGTCTTCTTCCTACTGCAGCAGTAGCATCAAATCCTAATTTAAAgtaagtt-atagcttcttgactcaagcaatcttattataattattttttgataggcaaataagactttatatatatgaagtgtcattcaaaagtgcccatc
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19876407|gb|AU237238.1|AU237238
EST:     GCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAA                         ACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGGAAAAGTACAGTAGC
genomic: GCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAAgtaagtttgc ... actcgtgtagACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGGAAAAGTACAGTAGC
EST: gi|116454044|gb|EG496636.1|EG496636
EST:     GCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAA                         ACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGG
genomic: GCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAAgtaagtttgc ... actcgtgtagACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGG
EST: gi|116454043|gb|EG496635.1|EG496635
EST:     GCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAA                         ACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGGAAA
genomic: GCGGAACGTCTTGTCCCTACAGCAGCGGCAATGTTTAGCCCCAATCTTAAgtaagtttgc ... actcgtgtagACGTTTGGTCGGTTTGGCTGGTCCTCCTGGTGCCGGGAAA