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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGAGTTCCTAAGAGCCAGTTTTTCAACACATAGGCCTTCATGCCAAGAGACGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTgtgagtaattttataaacctttaaccagtcttcacgaattttgtgttgtttatgatttacctgcttcaacatccgatattatatatgtaggataagattt...

Basic information

species Arabidopsis thaliana
transcript AT4G16180.1
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|116426956|gb|EG469548.1|EG469548
EST:     CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCTT                         AGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
genomic: CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTgtgagtaatt ... ctttctctagAGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
EST: gi|116426954|gb|EG469546.1|EG469546
EST:     CGGGCGAGTCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCT                         AGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
genomic: CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTgtgagtaatt ... ctttctctagAGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
EST: gi|116426955|gb|EG469547.1|EG469547
EST:     CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCT                         AGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
genomic: CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTgtgagtaatt ... ctttctctagAGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
EST: gi|116426974|gb|EG469566.1|EG469566
EST:     CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCT                         AGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
genomic: CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTgtgagtaatt ... ctttctctagAGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
EST: gi|116426972|gb|EG469564.1|EG469564
EST:     CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCT                         AGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
genomic: CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTgtgagtaatt ... ctttctctagAGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
EST: gi|116426950|gb|EG469542.1|EG469542
EST:     CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCT                         AGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG
genomic: CGGGCGAGCCACTTGATATTGAGCATCGAGTTGTTTATAATATCTTTCCTgtgagtaatt ... ctttctctagAGTGGGCAACCTGAATTAATAGCTCTGGAGAAGGCAGTGAAAGAAGCCATG