1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CCTACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAAACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGgtatcaacttgtatatctgattatgttttctttgctttggatttgattttgtcttgtgtattgaatatag
species | Arabidopsis thaliana |
transcript | AT3G50670.2 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: ATTGGAGTACAAACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAG GTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACGEST: gi|116473967|gb|EG516559.1|EG516559
genomic: ATTGGAGTACAAACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGgtatcaactt ... ttgaatatagGTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACG
EST: ATTGGAGTACAAACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAG GTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACGEST: gi|164215000|gb|ES051983.1|ES051983
genomic: ATTGGAGTACAAACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGgtatcaactt ... ttgaatatagGTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACG
EST: CCCGCCTTATACAG GTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACG
genomic: CCCGCCTTATACAGgtatcaactt ... ttgaatatagGTATGGCTCAGTTTGTAAGTAACTTTGCTGAGCCTGGGGATCCAGAATACG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTACTGGCTTAACAAACAATCTCTTGAAGCTTTTTGAGCCACGTCCGCCATTGGAGTACAAACCACCACCAGAGAAGAGAAAGTGCCCGCCTTATACAGgtatcaacttgtatatctgattatgttttctttgctttggatttgattttgtcttgtgtattgaatatag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA