1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...attcccttttggttatttaatcaacatcacaagttgcaacaatttcttcttaaaatgccctgttcagctcagctgatatttatttttgttcaccttatagATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGTGGGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGG
species | Zea mays |
transcript | GRMZM2G011068_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAG ATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGTEST: gi|71448594|gb|DR829644.1|DR829644
genomic: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAGgtcttgcaca ... caccttatagATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGT
EST: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAG ATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGTEST: gi|71436330|gb|DR817380.1|DR817380
genomic: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAGgtcttgcaca ... caccttatagATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGT
EST: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAG ATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGTEST: gi|31664610|gb|CD573543.1|CD573543
genomic: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAGgtcttgcaca ... caccttatagATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGT
EST: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAG ATACGTCAATTTGEST: gi|16926249|gb|BM079317.1|BM079317
genomic: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAGgtcttgcaca ... caccttatagATACGTCAATTTG
EST: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAG ATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGTEST: gi|211143110|gb|FL166797.1|FL166797
genomic: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAGgtcttgcaca ... caccttatagATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGT
EST: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAG ATACGTCAATTTEST: gi|76288774|gb|DV028342.1|DV028342
genomic: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAGgtcttgcaca ... caccttatagATACGTCAATTT
EST: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAG ATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGT
genomic: TCCCAAATCATCGACATTATGCTACTGCTTCAGTTGGAACAACCGCAGAGgtcttgcaca ... caccttatagATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGT
cttcttaaaatgccctgttcagctcagctgatatttatttttgttcaccttatagATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGTGGGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGG
agctgat putative branch site (score: 42)
tttttgttcacctt putative PPT
tgatatttatttttgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| attcccttttggttatttaatcaacatcacaagttgcaacaatttcttcttaaaatgccctgttcagctcagctgatatttatttttgttcaccttatagATACGTCAATTTGGAAGGTTGGAAGATGGTTCATTAAATGTTGTTGCCCGTGGGCAGCAAAGATTTCGTTTAAGGAGGCATTGGATTGATGTTGATCGGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - ttttggt
- - - - - - - - - - - aacatca
- - - - - - - - - - - - - - - -agttgca
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgccctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcagctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttgtt