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gttagccatctatccatcagaatgaatctgcaaagttttgatagcatttaccttacaattttttttttttgactgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACAATGGAGAGGCTATGAAACCGCTTGAATCTGAGGGCAAGACGCTTTCCC
species | Zea mays |
transcript | GRMZM2G472991_T01 |
intron # | 14 |
splice site | 3' |
intron type | U2 |
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACEST: gi|93016529|gb|EB642049.1|EB642049
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
EST: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAG AATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
genomic: GTAATCTTGCCTCAAGGGATTCAGATGTGCCTGGAACTTTTTCTGAAGAGgttagccatc ... actgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGAC
tctgcaaagttttgatagcatttaccttacaattttttttttttgactgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACAATGGAGAGGCTATGAAACCGCTTGAATCTGAGGGCAAGACGCTTTCCC
ttttgac putative branch site (score: 3)
ttttttttttttgact CT-rich tract
atttaccttacaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttagccatctatccatcagaatgaatctgcaaagttttgatagcatttaccttacaattttttttttttgactgggacagAATGAAACAAGCTGTAGCAGTGAGAAGAGATTGGAAAGTCCCTCGGGTGACAATGGAGAGGCTATGAAACCGCTTGAATCTGAGGGCAAGACGCTTTCCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA