1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtattgcatcggaaccgctgcgcccgcgcccttatgttctgctgaaatccgaatccgtcgcctcccgtccgcacgcgtgctcccgaaatcacatctccatgacctcttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCGTCGTCTCCAAGTGCAGATACACCATCGCCATGCTCTCCGACCCCAGCG
species | Zea mays |
transcript | GRMZM2G153984_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|74244863|gb|DT652777.1|DT652777
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|71328008|gb|DR800651.1|DR800651
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|148969030|gb|EE019740.2|EE019740
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|148969718|gb|EE020590.2|EE020590
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|78084019|gb|DV512412.1|DV512412
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|101382897|gb|EB813502.1|EB813502
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|78119858|gb|DV538242.1|DV538242
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|211111950|gb|FL269638.1|FL269638
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGC-CCACCGTCGGGGAGACGCCTGCCTCCEST: gi|71439692|gb|DR820742.1|DR820742
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|89764409|gb|DY691230.1|DY691230
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|13198752|gb|BG354554.1|BG354554
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGEST: gi|50326300|gb|CO521426.1|CO521426
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGG
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|149051791|gb|EE155917.2|EE155917
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|50334992|gb|CO530118.1|CO530118
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|71448020|gb|DR829070.1|DR829070
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|149075802|gb|EE164336.2|EE164336
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|149081805|gb|EE170963.2|EE170963
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|148954590|gb|EC900032.2|EC900032
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|149079137|gb|EE168066.2|EE168066
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|89762144|gb|DY689877.1|DY689877
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|211111947|gb|FL269635.1|FL269635
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|211111949|gb|FL269637.1|FL269637
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|22133534|gb|BQ833766.1|BQ833766
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|76917425|gb|DV166840.1|DV166840
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|93013137|gb|EB638657.1|EB638657
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|149112755|gb|EE295578.2|EE295578
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: CCTCCGCCACGGCTTCCGCGTCACCCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCEST: gi|149073536|gb|EE161839.2|EE161839
genomic: CCTCCGCCACGGCTTCCGCGTCACC-GTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGC-GCTCGGCGCCACCGTCGGGGAGACGCCTGCCTC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|22819821|gb|BU499911.1|BU499911
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|148967444|gb|EE018674.2|EE018674
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCEST: gi|211111945|gb|FL269633.1|FL269633
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
EST: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAAGACCCTCGCCAAG TGCCAAGAGCTCGCCGCGCTCGGCGCCACCGGCGGGGAGACGCCTGCCTCC
genomic: TCCTCCGCCACGGCTTCCGCGTCACCGTCTGGAACAGGACCCTCGCCAAGgtattgcatc ... cttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCC
cctcccgtccgcacgcgtgctcccgaaatcacatctccatgacctcttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCGTCGTCTCCAAGTGCAGATACACCATCGCCATGCTCTCCGACCCCAGCG
tgacctcttctcct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtattgcatcggaaccgctgcgcccgcgcccttatgttctgctgaaatccgaatccgtcgcctcccgtccgcacgcgtgctcccgaaatcacatctccatgacctcttctcctagTGCCAAGAGCTCGCCGCGCTCGGCGCCACCGTCGGGGAGACGCCTGCCTCCGTCGTCTCCAAGTGCAGATACACCATCGCCATGCTCTCCGACCCCAGCG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT