1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...agtgtgcatacctctgtttctctctctctttctccccttctcctcccaccctcaccccctccataatgtgtttgctgactattatttttcggttttgcagTAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAG
species | Vitis vinifera |
transcript | Vv14s0066g02630.t01 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: TTAGTTCTTGCTGTTTCTTTTGCTAAAGAAGCTGATCAAATTGTTTCAAG TAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAGEST: gi|30130802|gb|CB916141.1|CB916141
genomic: TTAGTTCTTGCTGTTTCTTTTGCTAAAGAAGCTGATCAAATTGTTTCAAGgtaagtcact ... ggttttgcagTAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAG
EST: TTAGTTCTTGCTGTTTCTTTTGCTAAAGAAGCTGATCAAATTGTTTCAAG TAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAGEST: gi|110398356|gb|EC964659.1|EC964659
genomic: TTAGTTCTTGCTGTTTCTTTTGCTAAAGAAGCTGATCAAATTGTTTCAAGgtaagtcact ... ggttttgcagTAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAG
EST: TTAGTTCTTGCTGTTTCTTTTGCTAAAGAAGCTGATCAAATTGTTTCAAG TAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAGEST: gi|30329741|gb|CD013003.1|CD013003
genomic: TTAGTTCTTGCTGTTTCTTTTGCTAAAGAAGCTGATCAAATTGTTTCAAGgtaagtcact ... ggttttgcagTAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAG
EST: TTAGTTCTTGCTGTTTCTTTTGCTAAAGAAGCTGATCAAATTGTTTCAAG TAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAG
genomic: TTAGTTCTTGCTGTTTCTTTTGCTAAAGAAGCTGATCAAATTGTTTCAAGgtaagtcact ... ggttttgcagTAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAG
ccaccctcaccccctccataatgtgtttgctgactattatttttcggttttgcagTAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAG
tgctgac putative branch site (score: 2)
tttttcg putative PPT
tgactattattttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agtgtgcatacctctgtttctctctctctttctccccttctcctcccaccctcaccccctccataatgtgtttgctgactattatttttcggttttgcagTAATGTTGCTGGATTCATCTATGTCACTGACATTGACATCCAGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - -gcatacc
- - - - - - -ctgtttc
- - - - - - - - - -ctctctc
- - - - - - - - - - - - - - -ttctccc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgtttgc