1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...agctaaaaattgtgtagcatgcgcttgatacaagtgtattcgaattggcttcaatatggtttgaaaagggaatttacttctaaatttggctattgagcagCTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCGTGGACGACTTCAAAGCAGTGAAGGATCCCAACACTGGAAGCTATTCCAT
species | Physcomitrella patens |
transcript | PP1S62_216V6.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GGAACCAATTGTTGCCAAGAAAAGAGAGGAACTCAAGGATGAAATGATCA CTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCGEST: gi|37847056|gb|BJ605064.1|BJ605064
genomic: GGAACCAATTGTTGCCAAGAAAAGAGAGGAACTCAAGGATGAAATGATCAgtaagatgtt ... tattgagcagCTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCG
EST: GGAACCAATTGTTGCCAAGAAAAGAGAGGAACTCAAGGATGAAATGATCA CTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCGEST: gi|208400047|gb|DC925259.1|DC925259
genomic: GGAACCAATTGTTGCCAAGAAAAGAGAGGAACTCAAGGATGAAATGATCAgtaagatgtt ... tattgagcagCTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCG
EST: GGAACCAATTGTTGCCAAGAAAAGAGAGGAACTCAAGGATGAAATGATCA CTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCGEST: gi|37847806|gb|BJ605814.1|BJ605814
genomic: GGAACCAATTGTTGCCAAGAAAAGAGAGGAACTCAAGGATGAAATGATCAgtaagatgtt ... tattgagcagCTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCG
EST: GGAACCAATTGTTGCCAAGAAAAGAGAGGAACTCAAGGATGAAATGATCA CTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCG
genomic: GGAACCAATTGTTGCCAAGAAAAGAGAGGAACTCAAGGATGAAATGATCAgtaagatgtt ... tattgagcagCTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCG
tggcttcaatatggtttgaaaagggaatttacttctaaatttggctattgagcagCTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCGTGGACGACTTCAAAGCAGTGAAGGATCCCAACACTGGAAGCTATTCCAT
ttctaaa putative branch site (score: 4)
aatttacttctaaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| agctaaaaattgtgtagcatgcgcttgatacaagtgtattcgaattggcttcaatatggtttgaaaagggaatttacttctaaatttggctattgagcagCTAAATTGAAGGACCTCGGTAACAACGTACTTGGAAAATTTGGCATGAGCGTGGACGACTTCAAAGCAGTGAAGGATCCCAACACTGGAAGCTATTCCAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG