1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaatgctccagactgaacttgtgtttcatgttccagtgcctcacattccacttccttgtcaatccggtagcacggaagttgtcctgcaaaacactttcttatttcggaccttggacactttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG
species | Physcomitrella patens |
transcript | PP1S94_133V6.2 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|67724422|gb|BJ974681.1|BJ974681
genomic: CTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTEST: gi|162208279|gb|FC384383.1|FC384383
genomic: GTTTCAGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
EST: AGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCG GACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
genomic: AGTCTTGACCTCAGCGGTTTGAAGGATCTTCTTTCTGGCAACGCGgtaatgctcc ... ctttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATT
cggaagttgtcctgcaaaacactttcttatttcggaccttggacactttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG
cacttttt CT-rich tract
tttcttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaatgctccagactgaacttgtgtttcatgttccagtgcctcacattccacttccttgtcaatccggtagcacggaagttgtcctgcaaaacactttcttatttcggaccttggacactttttgcagGACCCTAGCCTTGTGCCGACAACTCTAGGAGCAGCCGCTGCTGCAGGAATTGGTGTTGCCGTCTTCACTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG