Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...ctgaagctgttagaccgtgcacagctgttagggtttcctgttgtgttggcaattttttttgatattgatcagtaatcgggatggcttgtactttactcagGGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGTCAGCACCCAAGGACACAGCTTCGGCACTTTCTG

Basic information

species Physcomitrella patens
transcript PP1S6_158V6.2
intron # 2
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162181974|gb|FC356845.1|FC356845
EST:     CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAG                         GGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
genomic: CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAGgtaccattcc ... ctttactcagGGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
EST: gi|22133292|gb|BQ827654.1|BQ827654
EST:     CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAG                         GGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
genomic: CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAGgtaccattcc ... ctttactcagGGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
EST: gi|162176017|gb|FC351837.1|FC351837
EST:     CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAG                         GGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT
genomic: CACGCCATGGTTGATGGATTTGGGTACTAATTGGGCTCAAGAAAGTTGAGgtaccattcc ... ctttactcagGGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttggcaattttttttgatattgatcagtaatcgggatggcttgtactttactcagGGAAGTAACAAACGAAGGCAAACCTATTTAAAATAATGGCCCCTGACAAGTCAGCACCCAAGGACACAGCTTCGGCACTTTCTG
                 tattgat  putative branch site (score: 3)
                                             ctttactc  putative PPT
     aattttttttgatatt  TA-rich tract