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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgcatttcttcatattatacttctgaagcagtttctctctcttaaactaaagctataactacctttgactagcaacaagtatagttttattacaaatgttttaacagtttgtggttcttaacagGTCGGTAAGGCATTAGATACCACCAATTTGAAACAACCTGTAAAAGTTCCTCCAGGCCTTTTCTTCCAACACACAGGGCACAG

Basic information

species Physcomitrella patens
transcript PP1S206_25V6.1
intron # 13
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37844406|gb|BJ602414.1|BJ602414
EST:     TTGGGAGCTGCGCCGAGGATGGATTGCTTAATGTGTGGGATTATGAAAAG                         GTCGGTAAGGCATTAGATACCACCAATTTGAAACAACCTGTAAAAGTTCCT
genomic: TTGGGAGCTGCGCCGAGGATGGATTGCTTAATGTGTGGGATTATGAAAAGgtgtgcattt ... ttcttaacagGTCGGTAAGGCATTAGATACCACCAATTTGAAACAACCTGTAAAAGTTCCT
EST: gi|37838633|gb|BJ596641.1|BJ596641
EST:     TTGGGAGCTGCGCCGAGGATGGATTGCTTAATGTGTGGGATTATGAAAAG                         GTCGGTAAGGCATTAGATACCACCAATTTGAAACAACCTGTAAAAGTTCCT
genomic: TTGGGAGCTGCGCCGAGGATGGATTGCTTAATGTGTGGGATTATGAAAAGgtgtgcattt ... ttcttaacagGTCGGTAAGGCATTAGATACCACCAATTTGAAACAACCTGTAAAAGTTCCT
EST: gi|208352860|gb|DC917824.1|DC917824
EST:     TTGGGAGCTGCGCCGAGGATGGATTGCTTAATGTGTGGGATTATGAAAAG                         GTCGGTAAGGCATTAGATACCACCAATTTGAAACAACCTGTAAAAGTTCCT
genomic: TTGGGAGCTGCGCCGAGGATGGATTGCTTAATGTGTGGGATTATGAAAAGgtgtgcattt ... ttcttaacagGTCGGTAAGGCATTAGATACCACCAATTTGAAACAACCTGTAAAAGTTCCT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagcaacaagtatagttttattacaaatgttttaacagtttgtggttcttaacagGTCGGTAAGGCATTAGATACCACCAATTTGAAACAACCTGTAAAAGTTCCTCCAGGCCTTTTCTTCCAACACACAGGGCACAG
                             ttttaac  putative branch site (score: 2)
                                             ttctt  putative PPT
       aagtatagttttatta  TA-rich tract