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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagtaccatttgtaatttgttctccctgcatattttggttgattaatggtcatgagtgggtatgtttgaaagatatgattttctaataatttttcttatgtttttcgcttttgcaccttttagACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGGACTCATGGTGTTGA

Basic information

species Glycine max
transcript GLYMA17G01500.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193648227|gb|FK595308.1|FK595308
EST:     CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAA                         ACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
genomic: CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAgtgagtacca ... caccttttagACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
EST: gi|13790574|gb|BG653165.1|BG653165
EST:     CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAA                         ACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
genomic: CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAgtgagtacca ... caccttttagACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
EST: gi|193680199|gb|FK625323.1|FK625323
EST:     CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAA                         ACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGAT
genomic: CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAgtgagtacca ... caccttttagACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGAT
EST: gi|207800501|gb|GD773784.1|GD773784
EST:     CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAA                         ACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
genomic: CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAgtgagtacca ... caccttttagACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
EST: gi|26047831|gb|CA784491.1|CA784491
EST:     CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAA                         ACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
genomic: CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAgtgagtacca ... caccttttagACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
EST: gi|37996199|gb|CF807788.1|CF807788
EST:     CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAA                         ACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG
genomic: CCATTGTTGCAGAGTATGGACAAACAATATTGGATTTGCTTTTGGCTGAAgtgagtacca ... caccttttagACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaagatatgattttctaataatttttcttatgtttttcgcttttgcaccttttagACACAACCGAAGAAGATCTGTTCCCGAATTGGATTGTGCGCATTTGATGGGACTCATGGTGTTGA
            ttctaat  putative branch site (score: 2)
                                tttttcgcttttgcac  putative PPT
     tatgattttctaataa  TA-rich tract