1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gctatttggatttggcaccaatacgattaccttctcagggactattttattttatcaagctctagaatctaacatctgacttaaattgtttccttggcagAGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGATACTTGAGGCAAACCACAGCATCCATGTCAGTTTCAGTGTTCTTGACTG
species | Glycine max |
transcript | GLYMA07G39940.1 |
intron # | 8 |
splice site | 3' |
intron type | U2 |
EST: GTCTTACAGCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTCAA AGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGAEST: gi|151404635|gb|EV274449.1|EV274449
genomic: GTCTTACAGCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTCAAgtgagtttct ... tccttggcagAGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: GTCTTACAGCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTCAA AGATATCACTACTACATTTCCCAGTTTTGCTTTTCACTCACAAGTTGATGAEST: gi|207844987|gb|GD815312.1|GD815312
genomic: GTCTTACAGCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTCAAgtgagtttct ... tccttggcagAGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: GTCTTACAGCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTCAA AGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGAEST: gi|208087510|gb|GD888538.1|GD888538
genomic: GTCTTACAGCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTCAAgtgagtttct ... tccttggcagAGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: CTTAACAAGCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTCAA AGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGAEST: gi|192304196|gb|FG993508.1|FG993508
genomic: CTTA-CA-GCATCCATCCCTTCTGAAAAATATGACTCTTCAGTATCTCAAgtgagtttct ... tccttggcagAGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
EST: AAAATATGACTCTTCAGTATCTCAA AGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
genomic: AAAATATGACTCTTCAGTATCTCAAgtgagtttct ... tccttggcagAGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGA
tttattttatcaagctctagaatctaacatctgacttaaattgtttccttggcagAGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGATACTTGAGGCAAACCACAGCATCCATGTCAGTTTCAGTGTTCTTGACTG
ttgtttcctt CT-rich tract
ttaaattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gctatttggatttggcaccaatacgattaccttctcagggactattttattttatcaagctctagaatctaacatctgacttaaattgtttccttggcagAGATATCACTACTACATTTCCCAGTTTTGTTTTTCACTCACAAGTTGATGATACTTGAGGCAAACCACAGCATCCATGTCAGTTTCAGTGTTCTTGACTG
- - - -ggatttg
- - - - - - - -caccaat
- - - - - - - - - - - - - - -ccttctc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catctga