1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...tatgtagttaatatttaactaaccgattattagtttgcattgcattttagccatgtaagtgtaactaacatatgattttatttgatgagatgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGAGACACAGTTGCTAGATGCACCACTCAGGTGTATCCAAGGTCATGGACT
species | Glycine max |
transcript | GLYMA17G01580.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGG GTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGEST: gi|31463589|gb|CD405617.1|CD405617
genomic: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGGgtatgtctta ... tgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAG
EST: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGG GTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACCATCTGAGEST: gi|12773874|gb|BG238801.1|BG238801
genomic: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGGgtatgtctta ... tgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAG
EST: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGG GTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGEST: gi|17401384|gb|BM178166.1|BM178166
genomic: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGGgtatgtctta ... tgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAG
EST: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGG GTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGEST: gi|7286008|gb|AW598495.1|AW598495
genomic: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGGgtatgtctta ... tgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAG
EST: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAAG GTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGEST: gi|31476186|gb|CD418214.1|CD418214
genomic: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGGgtatgtctta ... tgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAG
EST: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGG GTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGEST: gi|192296325|gb|FG989073.1|FG989073
genomic: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGGgtatgtctta ... tgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAG
EST: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGG GTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAG
genomic: GATTCTGTGCAGTCATGGCACATTGACGGCTATTCCTTCTTTGTTGTAGGgtatgtctta ... tgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAG
tttagccatgtaagtgtaactaacatatgattttatttgatgagatgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGAGACACAGTTGCTAGATGCACCACTCAGGTGTATCCAAGGTCATGGACT
taactaacatatgatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgtagttaatatttaactaaccgattattagtttgcattgcattttagccatgtaagtgtaactaacatatgattttatttgatgagatgaaaaatagGTATGGTAGCGGGCAGTGGACAGCAGACAGTAGAGTACAATACAATCTGAGAGACACAGTTGCTAGATGCACCACTCAGGTGTATCCAAGGTCATGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CATGGA
tatgtag
- - - - - - - - -actaacc
- - - - - - - - - - - - - - - - -tttgcat
- - - - - - - - - - - - - - - - - - - - tgcattt
- - - - - - - - - - - - - - - - - - - - - - - - - ccatgta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -actaaca