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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttataatttttttaatacttaataatgctttctttttttacctttttctatatgttaatttttatttttgttttcagTTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG

Basic information

species Glycine max
transcript GLYMA17G01500.1
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|193457197|gb|FK423593.1|FK423593
EST:     ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAG                         TTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
genomic: ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGgttataattt ... ttgttttcagTTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
EST: gi|37996199|gb|CF807788.1|CF807788
EST:     ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAG                         TTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
genomic: ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGgttataattt ... ttgttttcagTTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
EST: gi|163922686|gb|EH038736.1|EH038736
EST:     ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGGAAAGGATATTGGCAG                         TTTGATATGGGAGATGTACTTATTGGCGGGTAA-CCCACTG
genomic: ATAAGGGAAAGCACACTTATGTGCCTGTGACCAGAAAAGGATATTGGCAGgttataattt ... ttgttttcagTTTGATATGGGAGATGTACTTATTGGCGG-TAAACCCACTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taatgctttctttttttacctttttctatatgttaatttttatttttgttttcagTTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG
                              tgttaat  putative branch site (score: 3)
                                    tttttatttttgtttt  CT-rich tract
      tttctttttttacctt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gttataatttttttaatacttaataatgctttctttttttacctttttctatatgttaatttttatttttgttttcagTTTGATATGGGAGATGTACTTATTGGCGGTAAACCCACTG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG