1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tttattatatttccatatatttagatcttgttaatgaactgattttattttttctttacacaaattcatcatctctcgctatttggtgcaatatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGG
species | Glycine max |
transcript | GLYMA16G21970.1 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TTTCTGCTTTGGCCAG ACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTTEST: gi|11274596|gb|BF324937.1|BF324937
genomic: TTTCTGCTTTGGCCAGgtatttcttg ... atatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTT
EST: TTTCTGCTTTGGCCAG ACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTTEST: gi|151406589|gb|EV276404.1|EV276404
genomic: TTTCTGCTTTGGCCAGgtatttcttg ... atatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTT
EST: TAGCATTGCAAATGGGCCTACCCCTTGTTCCAGTTTTCTGCTTTGGCCAG ACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAG-TTAATGCAAAATCTT
genomic: TAGCATTGCAAATGGGCCTACCCCTTGTTCCAGTTTTCTGCTTTGGCCAGgtatttcttg ... atatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTT
tattttttctttacacaaattcatcatctctcgctatttggtgcaatatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGG
aatatttgta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tttattatatttccatatatttagatcttgttaatgaactgattttattttttctttacacaaattcatcatctctcgctatttggtgcaatatttgtagACAAAAGCCTACAAGTGGTGGAAGCCTCCAGGAAGGTTAATGCAAAATCTTGCAAGGTTTTTGAAGATAATTCCATTATTTTTCTGGGGTATTTATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - aatgaac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ctctcgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tggtgca