1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttaagtgttgactctaacttgtttcttaaggctcttaaaactattcatcatactcttgcagctttcaacaatatatagactgaaaattgatttttactcaacagGCTTGCTTCAGGAGCTCGGGTTATAATCCAATCCAAACCATTTTCAGACACAGCATCTAGCAGCTGTTGAAAATTCAAGCTTCAGATGTTAGACACCTGA
species | Glycine max |
transcript | GLYMA12G08610.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGACTAAAATTGAAGAAA GEST: gi|23732229|gb|BU764272.1|BU764272
genomic: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAAgttaagtgtt ... tactcaacag-
EST: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGACTAAAATTGAAGAAA GEST: gi|24206014|gb|BU965267.1|BU965267
genomic: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAAgttaagtgtt ... tactcaacag-
EST: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAA GCTTGCTTCAGGAGCTCGGGTTATAATCCAATCCAAACCATTTTCAGACAC
genomic: GAGGATAGACTCATTTAAAGAAGAGGAGGAGGTGATTAAAATTGAAGAAAgttaagtgtt ... tactcaacagGCTTGCTTCAGGAGCTCGGGTTATAATCCAATCCAAACCATTTTCAGACAC
atactcttgcagctttcaacaatatatagactgaaaattgatttttactcaacagGCTTGCTTCAGGAGCTCGGGTTATAATCCAATCCAAACCATTTTCAGACACAGCATCTAGCAGCTGTTGAAAATTCAAGCTTCAGATGTTAGACACCTGA
aattgat putative branch site (score: 4)
tttttactc CT-rich tract
aatatatagactgaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaagtgttgactctaacttgtttcttaaggctcttaaaactattcatcatactcttgcagctttcaacaatatatagactgaaaattgatttttactcaacagGCTTGCTTCAGGAGCTCGGGTTATAATCCAATCCAAACCATTTTCAGACACAGCATCTAGCAGCTGTTGAAAATTCAAGCTTCAGATGTTAGACACCTGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG