1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtgagactgtaagatttttgaaataattgtacatttttttgaatctttttatgttaaggaagagttaccactaccttgttataatcacataatggatttgatttttctcttattgctatcagGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCAGATTCCACGTATAGGATGCTAA
species | Glycine max |
transcript | GLYMA20G31890.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: AGAAAAATAAGGGGATCAAGAACCCAGTTATANATTTTAAGGGATTTATG GTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAAEST: gi|17021542|gb|BM092576.1|BM092576
genomic: AGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATGgtgagactgt ... ttgctatcagGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAA
EST: AGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATG GTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAAEST: gi|5753586|gb|AI960873.1|AI960873
genomic: AGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATGgtgagactgt ... ttgctatcagGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAA
EST: AGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATG GTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAA
genomic: AGAAAAATAAGGGGATCAAGAACCCAGTTATAAATTTTAAGGGATTTATGgtgagactgt ... ttgctatcagGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAA
ccactaccttgttataatcacataatggatttgatttttctcttattgctatcagGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCAGATTCCACGTATAGGATGCTAA
atttgat putative branch site (score: 5)
tttttctcttattgct CT-rich tract
ttataatcacataat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagactgtaagatttttgaaataattgtacatttttttgaatctttttatgttaaggaagagttaccactaccttgttataatcacataatggatttgatttttctcttattgctatcagGTTGGTAATGCTGTTACTGATGATTATCATGATTATGTTGGCACATTTGAATATTGGTGGACCCATGGTTTGGTTTCAGATTCCACGTATAGGATGCTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG