1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtagttatccaaataattcgtgattgtccattttttattttaaagcattgatgaacttcctttaaattttcaaatgcatccctttcattacaccattgttgcaatgcattcatcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCAACTTCAGAATCCAGGGGCACAGTTTGAAACTTGTGGAGGTAGAAGGATC
species | Glycine max |
transcript | GLYMA17G01580.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCAEST: gi|9204473|gb|BE330697.1|BE330697
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
EST: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCAEST: gi|15815174|gb|BI787449.1|BI787449
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
EST: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCAEST: gi|23727663|gb|BU761864.1|BU761864
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
EST: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCAEST: gi|23727856|gb|BU761964.1|BU761964
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
EST: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAG GTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
genomic: TCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATCAAGgtagttatcc ... tcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCA
tttcaaatgcatccctttcattacaccattgttgcaatgcattcatcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCAACTTCAGAATCCAGGGGCACAGTTTGAAACTTGTGGAGGTAGAAGGATC
tttcatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagttatccaaataattcgtgattgtccattttttattttaaagcattgatgaacttcctttaaattttcaaatgcatccctttcattacaccattgttgcaatgcattcatcatctgcagGTAAGACTTATAGATTCAGGATATCAAATGTGGGGCTCACAACATCAATCAACTTCAGAATCCAGGGGCACAGTTTGAAACTTGTGGAGGTAGAAGGATC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG