1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
...ccatcttttttattttcctgtaagtgattctggagaagtttattcaaattgagcccaagtccaaactatgtgtttattattgctgttgttgttgatggtaGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACAAAGCTTCTGGGGGAAGAAAAGTCAATTTGATTTCCCATTCCATGGGAGG
species | Glycine max |
transcript | GLYMA18G47970.1 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATA GGATTGGCGAGGTAATGGAAGGTCTTAAAAGCAAGTTGGGAACTGGTCACAEST: gi|7284783|gb|AW597208.1|AW597208
genomic: CAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATAggtacactat ... gttgatggtaGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACA
EST: CAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATA GGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACAEST: gi|193684939|gb|FK626477.1|FK626477
genomic: CAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATAggtacactat ... gttgatggtaGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACA
EST: CAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATA GGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACA
genomic: CAAGGGAACCACACTCTTTGGATACGGATATGATTTCAGGCAAAGCAATAggtacactat ... gttgatggtaGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACA
aaattgagcccaagtccaaactatgtgtttattattgctgttgttgttgatggtaGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACAAAGCTTCTGGGGGAAGAAAAGTCAATTTGATTTCCCATTCCATGGGAGG
tgttgat putative branch site (score: 4)
tatgtgtttattatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ccatcttttttattttcctgtaagtgattctggagaagtttattcaaattgagcccaagtccaaactatgtgtttattattgctgttgttgttgatggtaGGATTGGCAAGGTAATGGAAGGTCTTAAAAGCAAGTTGGAAACTGCTCACAAAGCTTCTGGGGGAAGAAAAGTCAATTTGATTTCCCATTCCATGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - -tcctgta
- - - - - - - - - - - - -gattctg
- - - - - - - - - - - - - - - - - - - - - - - - - - -cccaagt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccaaact
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tgctgtt