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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaaccccttgccttcatttctatttattctctcttcatttcatcctctcctcatcattcccttgataattaccctttgttattgtagAGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGCCTTCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATC

Basic information

species Glycine max
transcript GLYMA17G01580.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|10845944|gb|BF068954.1|BF068954
EST:     CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGA                         AGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
genomic: CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGAgtaaacccct ... gttattgtagAGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
EST: gi|9204473|gb|BE330697.1|BE330697
EST:     CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGA                         AGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
genomic: CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGAgtaaacccct ... gttattgtagAGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
EST: gi|15815174|gb|BI787449.1|BI787449
EST:     CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGA                         AGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
genomic: CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGAgtaaacccct ... gttattgtagAGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
EST: gi|23727663|gb|BU761864.1|BU761864
EST:     CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGA                         AGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
genomic: CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGAgtaaacccct ... gttattgtagAGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
EST: gi|23727856|gb|BU761964.1|BU761964
EST:     CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGA                         AGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC
genomic: CCGGGGACATTACCATACTTGCTGGAGATTGGTTCAAGCTTGACCACCGAgtaaacccct ... gttattgtagAGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cttcatttcatcctctcctcatcattcccttgataattaccctttgttattgtagAGACTGAGACGACTCCTAGAGAATGGTCATAATCTCCCCTTCCCTGATGGCCTTCTTATCAATGGACGTGGTTGGAATGGAAACACCTTCACTGTTGATC
                           ccttgat  putative branch site (score: 5)
                                       ccctttgtt  putative PPT
                             ttgataatta  TA-rich tract