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...aaatcaaacagtaagaaagagcagtctgtttatgacatgtcattagatgcaattatgttatggttattgtgtatttgggacaatgcttaactgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAGGATGTTATAGACAAGCTTATTGGTGAGTGTGACAGGAAAATAGGGAGG
species | Glycine max |
transcript | GLYMA18G47910.1 |
intron # | 2 |
splice site | 3' |
intron type | U12 (go to U12 genes for details) |
EST: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA ATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAEST: gi|208271764|gb|GE068686.1|GE068686
genomic: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGAgtatccttct ... ctgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGA
EST: GGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA ATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAEST: gi|193555503|gb|FK515948.1|FK515948
genomic: GGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGAgtatccttct ... ctgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGA
EST: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA ATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAEST: gi|209725035|gb|BW659770.1|BW659770
genomic: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGAgtatccttct ... ctgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGA
EST: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA ATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAEST: gi|193492617|gb|FK455741.1|FK455741
genomic: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGAgtatccttct ... ctgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGA
EST: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA ATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAEST: gi|193649862|gb|FK595459.1|FK595459
genomic: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGAgtatccttct ... ctgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGA
EST: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA ATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAEST: gi|208276609|gb|GE074791.1|GE074791
genomic: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGAgtatccttct ... ctgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGA
EST: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGA ATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGA
genomic: ATGGATATGGGCCCCTGCCCTAAGGTCCACTCCTTGCAGCTCCGGAAAGAgtatccttct ... ctgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGA
gatgcaattatgttatggttattgtgtatttgggacaatgcttaactgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAGGATGTTATAGACAAGCTTATTGGTGAGTGTGACAGGAAAATAGGGAGG
atgcttaac putative branch site
ctgtttct CT-rich tract
aattatgttat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaatcaaacagtaagaaagagcagtctgtttatgacatgtcattagatgcaattatgttatggttattgtgtatttgggacaatgcttaactgtttctagATATGAGGAGGCGAAAGCAAAGGGGACCGATAATTATGACAGGGAGTTGGAGGATGTTATAGACAAGCTTATTGGTGAGTGTGACAGGAAAATAGGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- -tcaaaca
- - - - - - aagaaaga
- - - - - - - - - - - -gtctgtt
- - - - - - - - - - - - - - - - - acatgtc
- - - - - - - - - - - - - - - - - - - - - - -gatgcaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - -tgttatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caatgct