1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
gtaggcacaccgcaaagaaacccccacgggccacgtgcctacccatcttcacgcacacacaactacacaagtgcatcccaagtcctaacacgcttttgcgcgcgcccccctcctcagGCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAG
species | Chlamydomonas reinhardtii |
transcript | EDP06278 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAG GCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCAEST: gi|16073522|gb|BI875518.1|BI875518
genomic: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAGgtaggcacac ... ccctcctcagGCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCA
EST: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAG GCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCAEST: gi|15698892|gb|BI723197.1|BI723197
genomic: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAGgtaggcacac ... ccctcctcagGCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCA
EST: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAG GCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCAEST: gi|10773110|gb|AV623933.1|AV623933
genomic: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAGgtaggcacac ... ccctcctcagGCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCA
EST: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAG GCCTCCCGTTCCATGTATGCACGCGCAATATGCEST: gi|15698891|gb|BI723196.1|BI723196
genomic: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAGgtaggcacac ... ccctcctcagGCCTCCCGTTCCATGTATGCACGCGCAATATGC
EST: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAG GCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCA
genomic: CTTCCAGCAGACCGTGCTGCTCAGCCACACACACCTGGACCATGTCGGAGgtaggcacac ... ccctcctcagGCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCA
ctacacaagtgcatcccaagtcctaacacgcttttgcgcgcgcccccctcctcagGCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAG
tcctaac putative branch site (score: 1)
cgcgcccccctcctc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggcacaccgcaaagaaacccccacgggccacgtgcctacccatcttcacgcacacacaactacacaagtgcatcccaagtcctaacacgcttttgcgcgcgcccccctcctcagGCCTCCCGTTCCATGTATGCACGCGCAATATGCTGCAGCTGCCCCCTAGCAAGGTGGTGGTGCCTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG