1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gtgagaccaggactcgatagctgctcgggttcgttccctggcgcggagaaaccagcgcggcagtggtcagcggtgatgctgacgcgcctgtgtgtcctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAG
species | Chlamydomonas reinhardtii |
transcript | EDP04575 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGG GCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGGEST: gi|10793379|gb|AV630745.1|AV630745
genomic: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccag ... ctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
EST: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGG GCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGGEST: gi|49468237|gb|BP096098.1|BP096098
genomic: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccag ... ctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
EST: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGG GCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGGEST: gi|49466914|gb|BP094827.1|BP094827
genomic: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccag ... ctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
EST: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGG GCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
genomic: TTCAGAACTCACAAAAGACGCCTGTCACCATCATCACTGGCTTTCTAGGGgtgagaccag ... ctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGG
ccagcgcggcagtggtcagcggtgatgctgacgcgcctgtgtgtcctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAG
tgctgac putative branch site (score: 2)
tgtcctttcc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagaccaggactcgatagctgctcgggttcgttccctggcgcggagaaaccagcgcggcagtggtcagcggtgatgctgacgcgcctgtgtgtcctttccatagGCTGGCAAGACTACCCTTCTAAATTACATTCTCAAGGAGAAGGGAAGCCGGAGCATTGCTGTGATTGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA