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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaaagactaatcaaaagtgttttttccttttctcactcactcgtggtatttgagttcggttttaccaattgatgtctttccatcttcaattcaagGTTCATCGATGTGAATCTCGATACAGCAATGCAACGTGTTGAAAACCGGCATATCTCAACTG

Basic information

species Arabidopsis thaliana
transcript AT1G03030.1
intron # 9
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|19742917|gb|AU228270.1|AU228270
EST:     TATGTTTGATGAGAAATG                         GTTCATCGATGTGAATCTCGATACAGCAATGCAACGTGTTGAAAACCGGCA
genomic: TATGTTTGATGAGAAATGgtaaagacta ... tcaattcaagGTTCATCGATGTGAATCTCGATACAGCAATGCAACGTGTTGAAAACCGGCA
EST: gi|86085201|gb|DR380960.1|DR380960
EST:     TTAGAAGAAGGGTCTTGGAAAGACATCTCAGATATGTTTGATGAGAAATG                         GTTCATCGATGTGAATCTCGATACAGCAATGCAACGTGTTGAAAACCGGCA
genomic: TTAGAAGAAGGGTCTTGGAAAGACATCTCAGATATGTTTGATGAGAAATGgtaaagacta ... tcaattcaagGTTCATCGATGTGAATCTCGATACAGCAATGCAACGTGTTGAAAACCGGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tcgtggtatttgagttcggttttaccaattgatgtctttccatcttcaattcaagGTTCATCGATGTGAATCTCGATACAGCAATGCAACGTGTTGAAAACCGGCATATCTCAACTG
                          aattgat  putative branch site (score: 4)
 tgtctttccatcttc  CT-rich tract
 tatttga  TA-rich tract