1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgaaaaacaaattctctaccgcatagattacttgttatgatccatcactcactgtctaggtttacttttttactttggttctctgattcactcattgttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAAGAGAAAAGAGATTATTCAAACCGGTTTGCGTTTGGTTATTTACCTATTT
species | Arabidopsis thaliana |
transcript | AT4G11150.1 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAEST: gi|164173107|gb|ES066670.1|ES066670
genomic: CACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAA
EST: GCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCEST: gi|164117797|gb|ES124630.1|ES124630
genomic: GCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCC
EST: GAAACTCCCAGTG ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAAEST: gi|124730895|gb|EH822297.1|EH822297
genomic: GAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAA
EST: CGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATEST: gi|124860564|gb|EH945001.1|EH945001
genomic: CGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGAT
EST: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG ATCCGTAAGTCGTTGTTCGGCCAAGTTAEST: gi|163971523|gb|ES133029.1|ES133029
genomic: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTA
EST: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAEST: gi|125042597|gb|EL114866.1|EL114866
genomic: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAA
EST: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTG ATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGA
genomic: ACACACTTGATGCGCGTCTTGATGTGGCATTCCGTATGAAACTCCCAGTGgtatgaaaaa ... ttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGA
tgtctaggtttacttttttactttggttctctgattcactcattgttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAAGAGAAAAGAGATTATTCAAACCGGTTTGCGTTTGGTTATTTACCTATTT
ctctgat putative branch site (score: 4)
tttacttttttacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaaaaacaaattctctaccgcatagattacttgttatgatccatcactcactgtctaggtttacttttttactttggttctctgattcactcattgttgttaacagATCCGTAAGTCGTTGTTCGGCCAAGTTACTGCCTGATGAAAGAAAGGAAAAGAGAAAAGAGATTATTCAAACCGGTTTGCGTTTGGTTATTTACCTATTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA