1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtatgtaaataagatttcgtaccttttatatatgcatcaccccttttgtttttcgctatcaaaacttatatctgaataaaactcgattttaacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG
species | Arabidopsis thaliana |
transcript | AT4G14455.1 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG GTCTTTGAGAAGAAGTCTAATCGAAAA-GTTGCAAACTCATAGCTTATTTTEST: gi|86064864|gb|DR360621.1|DR360621
genomic: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
EST: TGGACTCCGCGAGGGG-ATAATGTCGGGAACGATCAACCGCTTCAAGTTG GTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTTEST: gi|86064865|gb|DR360622.1|DR360622
genomic: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
EST: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG GTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTTEST: gi|86086356|gb|DR382115.1|DR382115
genomic: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
EST: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG GTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTTEST: gi|164095232|gb|ES185573.1|ES185573
genomic: TGGACTCCGCGAGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTT
EST: GGACTCCGCGAGGGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTG GTCTTTGAGAAGAAGTCTAATCGAAAAAGTT
genomic: GGACTCCGCGA-GGGGGATAATGTCGGGAACGATCAACCGCTTCAAGTTGgtatgtaaat ... aacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTT
ttgtttttcgctatcaaaacttatatctgaataaaactcgattttaacacgacagGTCTTTGAGAAGAAGTCTAATCGAAAAAGTTGCAAACTCATAGCTTATTTTGTGCTCCTGTTCTTGATCATGTATTACCTTATTAG
ttttaac putative branch site (score: 2)
aaaacttatatctgaa TA-rich tract