Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagttcctcttcctacattaaaatgttttatgctcatggattttgcgtgttttgaacatattaatttgctagttttgtgttgttgttgtttggaagtattttagtatatcgaaaatgtatatgcgtataagattttgattataggtctcctccaaggagcatgcagGTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTGAAAGCTACCGGGAGTG

Basic information

species Arabidopsis thaliana
transcript AT5G48545.1
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|125089659|gb|EL147943.1|EL147943
EST:     TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA                         GTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCC
genomic: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcct ... gagcatgcagGTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCC
EST: gi|124727579|gb|EH818981.1|EH818981
EST:     TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA                         GTTGTTGCTGCCA
genomic: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcct ... gagcatgcagGTTGTTGCTGCCA
EST: gi|164071626|gb|ES011640.1|ES011640
EST:     CCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA                         GTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTG
genomic: CCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcct ... gagcatgcagGTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTG
EST: gi|124861619|gb|EH946056.1|EH946056
EST:     TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCA                         GTTGTTGCTGCCA
genomic: TTATCATTCCAAAGTTACATTATCCAACCTTAGAGGAAACTCCTCCCTCAgtaagttcct ... gagcatgcagGTTGTTGCTGCCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aaaatgtatatgcgtataagattttgattataggtctcctccaaggagcatgcagGTTGTTGCTGCCATGTGTTCTAAAGTGCCTCTTATCAGTAACGCCATCGTGAAAGCTACCGGGAGTG
                     ttttgat  putative branch site (score: 4)
              tataagattttgatta  TA-rich tract