1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...tatgatcatagcttttttcgtgcatatggttgttagattggctgagtttgagtgacacatcgagaattgaatttcacactatgaagcttgttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAATGGAGATGGAGGTTACAGGTATTCAGTGGATCCTCAAAAACTAGAAGAGT
species | Arabidopsis thaliana |
transcript | AT4G16180.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAG GTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAATEST: gi|116426950|gb|EG469542.1|EG469542
genomic: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctc ... ttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
EST: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAG GTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAATEST: gi|116426960|gb|EG469552.1|EG469552
genomic: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctc ... ttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
EST: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAG GTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
genomic: GAGAGAGTGTTCGATCCGATGTCCGCCGTATGCTTCACTCCCGTGCCGAGgtacaatctc ... ttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAAT
gtttgagtgacacatcgagaattgaatttcacactatgaagcttgttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAATGGAGATGGAGGTTACAGGTATTCAGTGGATCCTCAAAAACTAGAAGAGT
cttgtttt CT-rich tract
aattgaattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatgatcatagcttttttcgtgcatatggttgttagattggctgagtttgagtgacacatcgagaattgaatttcacactatgaagcttgttttgtttagGTACCATTTCAGGTTCCTTTGGAAGTGAATATAGTGCTTGTGGGTTTGAATGGAGATGGAGGTTACAGGTATTCAGTGGATCCTCAAAAACTAGAAGAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA