1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagaaccgtgcgtcgtttgtcgccgtcggtatccaccagagaccgtcctatgtcgctgatgtgctccttgtgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTTCGCTGGTCGGCGCGGCGGAGGCGGCGGCTGCTCAACGGGTAAGGGAGA
species | Zea mays |
transcript | GRMZM5G887922_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACAT GCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTEST: gi|50328490|gb|CO523616.1|CO523616
genomic: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACATgtaagaaccg ... tgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGT
EST: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACAT GCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGEST: gi|38688341|gb|CK145372.1|CK145372
genomic: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACATgtaagaaccg ... tgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCG
EST: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACAT GCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTEST: gi|211533851|gb|FL420810.1|FL420810
genomic: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACATgtaagaaccg ... tgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGT
EST: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACAT GCGGACAGGCTCCGGCGCGCGCTGEST: gi|148958521|gb|EC904763.2|EC904763
genomic: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACATgtaagaaccg ... tgccttgcagGCGGACAGGCTCCGGCGCGCGCTG
EST: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACAT GCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGT
genomic: CGCAGCGCGATCAGCACAGGAACGAGATGGACCGGCTGATCCAGGAACATgtaagaaccg ... tgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGT
tcggtatccaccagagaccgtcctatgtcgctgatgtgctccttgtgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTTCGCTGGTCGGCGCGGCGGAGGCGGCGGCTGCTCAACGGGTAAGGGAGA
cgctgat putative branch site (score: 52)
ctccttgt putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagaaccgtgcgtcgtttgtcgccgtcggtatccaccagagaccgtcctatgtcgctgatgtgctccttgtgccttgcagGCGGACAGGCTCCGGCGCGCGCTGGCCGACACTCGGCGGCGGCACTACCGTTCGCTGGTCGGCGCGGCGGAGGCGGCGGCTGCTCAACGGGTAAGGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT