1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaagcagatcaaacaaagcgcactccttggctccgcggcggatttcgtcttcttgggcagcagcaccgcacccttctgttccgatttcggatcgtgaaaaggtcgccggggacttaattgtcgggttgctgtgtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCAGTTCTTCTCTCTGCAGCAGCAACCGCAGGCGCAGGGGCCCAAGGTGAT
species | Zea mays |
transcript | GRMZM5G887922_T01 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGTCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|94472984|gb|EB701942.1|EB701942
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|211011073|gb|FL374942.1|FL374942
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|211434582|gb|FL418946.1|FL418946
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|211334867|gb|FL418387.1|FL418387
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|50328490|gb|CO523616.1|CO523616
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|74240590|gb|DT648504.1|DT648504
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|38688341|gb|CK145372.1|CK145372
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|211533851|gb|FL420810.1|FL420810
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATTGTCGTCGEST: gi|211530213|gb|FL396255.1|FL396255
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCAT-GTCGTCG
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|148958521|gb|EC904763.2|EC904763
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCEST: gi|211223962|gb|FL409225.1|FL409225
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
EST: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAG ATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCAC
genomic: GCCGCAGCAGGCTCAGGCTCCGCCCCTCTTCTTGGACTTCTCGCATGGAGgtaagcagat ... gtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGC
cggatcgtgaaaaggtcgccggggacttaattgtcgggttgctgtgtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCAGTTCTTCTCTCTGCAGCAGCAACCGCAGGCGCAGGGGCCCAAGGTGAT
acttaat putative branch site (score: 87)
acttaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagcagatcaaacaaagcgcactccttggctccgcggcggatttcgtcttcttgggcagcagcaccgcacccttctgttccgatttcggatcgtgaaaaggtcgccggggacttaattgtcgggttgctgtgtgcacatagATTACGGCGGCGGGAGGAAGCGGCAGCGCGAGGCGGAGCCCATGTCGTCGCAGTTCTTCTCTCTGCAGCAGCAACCGCAGGCGCAGGGGCCCAAGGTGAT
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