1 5' 3' | 2 5' 3' | 3 5' 3' |
gtacctgccgtggccgctgtgcatcttctaatcgtttcttccgcgtcgatcgtcggtctgctggatcgtattcggatgggtgatttgagcgtctgggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAGGCGCAGAAGGAGGCTATGGCGCCGCAGCAGGCTCAGGCTCCGCCCCTC
species | Zea mays |
transcript | GRMZM5G887922_T01 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAEST: gi|211011073|gb|FL374942.1|FL374942
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAEST: gi|211434582|gb|FL418946.1|FL418946
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAEST: gi|211301223|gb|FL404483.1|FL404483
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCAGCGATGGAGCTGCATCATCAEST: gi|211334867|gb|FL418387.1|FL418387
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCAGCGATGGAGCTGCATCATCAEST: gi|37420575|gb|CF647982.1|CF647982
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAEST: gi|50328490|gb|CO523616.1|CO523616
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAEST: gi|74240590|gb|DT648504.1|DT648504
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAEST: gi|38688341|gb|CK145372.1|CK145372
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAEST: gi|211533851|gb|FL420810.1|FL420810
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCAGCGATGGAGCTGCATCATCAEST: gi|211530213|gb|FL396255.1|FL396255
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCAGCGATGGAGCTGCATCATCAEST: gi|148958521|gb|EC904763.2|EC904763
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACT--CACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAEST: gi|211223962|gb|FL409225.1|FL409225
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAGGGCAGCCGGTTGGCGGCAGCGATGGAGCTGCATCATCAEST: gi|211130083|gb|FL382976.1|FL382976
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
EST: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAG CGGCGCGCCGGAAGGCAGCCGGTTGGCGGCAGCGATGGAGCTGCATCATCA
genomic: CAGGCGCATTATCACCACCACTACCACCGCGAGTCCCCTTTCCTCGTCAGgtacctgccg ... gggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtacctgccgtggccgctgtgcatcttctaatcgtttcttccgcgtcgatcgtcggtctgctggatcgtattcggatgggtgatttgagcgtctgggttgtcagCGGCGCGCCGGAGGGCAGCCGGTTGGCGGCGGCGATGGAGCTGCATCATCAGGCGCAGAAGGAGGCTATGGCGCCGCAGCAGGCTCAGGCTCCGCCCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGGCGGCG