1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tatttctaattgatgaattaaatgcagcttttgtcatttgttattattagtatttatcgggtaaatgtgcttttaatgtcatgtgccctgactattgcagGCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCAGATAACTATCATGTGTGCCAGTACCCAGAATGTGGCCGAAGATTTACAC
species | Zea mays |
transcript | GRMZM5G885700_T01 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TTCATACAGGAGAAAAGAATTTTGTGTGCCCACATGAAGGTTGTGGGAAG GCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCAEST: gi|50329241|gb|CO524367.1|CO524367
genomic: TTCATACAGGAGAAAAGAATTTTGTGTGCCCACATGAAGGTTGTGGGAAGgtaatcacac ... actattgcagGCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCA
EST: TTCATACAGGAGAAAAGAATTTTGTGTGCCCACATGAAGGTTGTGGGAAG GCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCAEST: gi|71444956|gb|DR826006.1|DR826006
genomic: TTCATACAGGAGAAAAGAATTTTGTGTGCCCACATGAAGGTTGTGGGAAGgtaatcacac ... actattgcagGCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCA
EST: TTCATACAGGAGAAAAGAATTTTGTGTGCCCACATGAAGGTTGTGGGAAG GCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCAEST: gi|71309036|gb|DR790783.1|DR790783
genomic: TTCATACAGGAGAAAAGAATTTTGTGTGCCCACATGAAGGTTGTGGGAAGgtaatcacac ... actattgcagGCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCA
EST: TTCATACAGGAGAAAAGAATTTTGTGTGCCCACATGAAGGTTGTGGGAAG GCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCA
genomic: TTCATACAGGAGAAAAGAATTTTGTGTGCCCACATGAAGGTTGTGGGAAGgtaatcacac ... actattgcagGCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCA
attagtatttatcgggtaaatgtgcttttaatgtcatgtgccctgactattgcagGCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCAGATAACTATCATGTGTGCCAGTACCCAGAATGTGGCCGAAGATTTACAC
ccctgac putative branch site (score: 3)
ttttaatgt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tatttctaattgatgaattaaatgcagcttttgtcatttgttattattagtatttatcgggtaaatgtgcttttaatgtcatgtgccctgactattgcagGCTTTTTCGTTGGATTTTAATTTAAAGGCACACATGAAAACACATTCTGCAGATAACTATCATGTGTGCCAGTACCCAGAATGTGGCCGAAGATTTACAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - tgatgaa
- - - - - - - - - - -atgcagc
- - - - - - - - - - - - - - - - -tcatttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -catgtgc