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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaactgattgcttgctggcttctccctgttgttgctgctgctgatgtcaaaacgcagacttttattttgtgactgtactgtcatgtcatcgtc...

Basic information

species Zea mays
transcript GRMZM5G885700_T01
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G885700_T02 (Zea mays), 5'ss of exon 2
lower sequence: LOC_Os02g34680.1 (Oryza sativa), 5'ss of exon 2
GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcg--gaactgattgcttgctggcttctccctgttgttgctgctgctgatgt-caaaacgcagacttttattt-tgtgactgtactgtcatgtcatcgtc
|||  |||| || |||||||||||||| ||||| |||| ||| ||||| |||||||||||| |||   |  ||  |   ||  | ||||  ||     |   ||| | ||  | | | |   || |  | |  |   | ||   |  | || |||| |||   
GGTTCCGCAGGATCTGGTCGTCGCCGGTGGCCCATGCGCGCTCTACAAATGGGTGCGAGgtacgccccgccctcttcaattttttgctttgcctccccgcc-ctgttactactttgctatgtgcggtttatcgtccgtatgctcgcgc-gtgatgttatca--
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149088134|gb|EE177283.2|EE177283
EST:     AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: gi|50329241|gb|CO524367.1|CO524367
EST:     AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: gi|89762364|gb|DY689981.1|DY689981
EST:     AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: gi|211050924|gb|FL038266.1|FL038266
EST:     AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: gi|71444956|gb|DR826006.1|DR826006
EST:     AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: gi|211050923|gb|FL038265.1|FL038265
EST:     AGAACTGGTCGTCGCCGGA--SCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: gi|211484014|gb|FL012872.1|FL012872
EST:     AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: gi|71309036|gb|DR790783.1|DR790783
EST:     AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
EST: gi|148935905|gb|EC879955.2|EC879955
EST:     AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG                         AGGACAGACTATCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT
genomic: AGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAGgtgcgcggaa ... ttacttacagAGGACAGACTAGCAGCTTTGAAGGCTAAGGACAAGAAGCATGGGGCAGAAT