Skip to another splice site:
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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttgaccttgtctgcccgtccgatggctctcacagtctctctcctccctcgagaaccccccccccccccccccccccccccttccgatttcgatttgaccttgtgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG

Basic information

species Zea mays
transcript GRMZM5G885700_T01
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM5G885700_T02 (Zea mays), 3'ss of exon 1
lower sequence: LOC_Os02g34680.1 (Oryza sativa), 3'ss of exon 1
gtgagttgaccttgtctgcccg---tccgatggctctcacagtctctctcctccctcgagaaccccccccccccccccccccccccccttccgatttcgatttgaccttgtgt---tcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG
||  |||   |||  || | ||   ||| ||  ||    |             | ||  |           |     |    |    ||  ||    ||    |  ||| |     |  | |||||  |||| || |||||||||||||| ||||| |||| ||| ||||| ||||||||||
gtccgttcctctttcctcctcgaattccaatcccttcttctaatgggagagagcttcttgttggtttgattcggattcggatctgatctctcgtccgcgccacgcgcttatacatgttgttagGGTTCCGCAGGATCTGGTCGTCGCCGGTGGCCCATGCGCGCTCTACAAATGGGTGCGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|149088134|gb|EE177283.2|EE177283
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: gi|50329241|gb|CO524367.1|CO524367
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: gi|89762364|gb|DY689981.1|DY689981
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: gi|211050924|gb|FL038266.1|FL038266
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: gi|71444956|gb|DR826006.1|DR826006
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: gi|211050923|gb|FL038265.1|FL038265
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGA--SCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: gi|211484014|gb|FL012872.1|FL012872
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: gi|71309036|gb|DR790783.1|DR790783
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
EST: gi|148935905|gb|EC879955.2|EC879955
EST:     CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGAGAAGGAGTG                         GGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG
genomic: CGCCCAGAGATGCAGATCCCCCACCGCCGTTACCGCTGGGTGAAGGAGTGgtgagttgac ... tgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cccccccccccccccccccccccttccgatttcgatttgaccttgtgttcttcagGGTCTCGCAAGAACTGGTCGTCGCCGGAGGCCCCTGCGTGCTGTACAAGTGGGTGCGAG
                                  atttgac  putative branch site (score: 4)
                                             tgttcttc  putative PPT