1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...actttctttttacaccgtaggttctttagttggtgtctgtgtgccaacaaccaagatatttacttatttgtacctgcgttttccttaactattcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAATATTTTGGGTAGCGCAGGCGATCACTAATGTCATAGTGAAGGACTTCC
species | Zea mays |
transcript | GRMZM5G885392_T01 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAEST: gi|88748429|gb|DY532570.1|DY532570
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: GGATGATTTCACGGGATTTGAAATCACATATTTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCCCTGCCTTTAEST: gi|32924858|gb|CF029670.1|CF029670
genomic: GGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTCTTGGATGATTTCACGAGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATATTCACATGGTTCGCCGCACTGCCCTTAEST: gi|71760700|gb|DR958637.1|DR958637
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAEST: gi|32925008|gb|CF029820.1|CF029820
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTCTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATATTCACATGGTTCGCCGCACTGCCCTTAEST: gi|32926006|gb|CF030818.1|CF030818
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTCTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATATTCACATGGTTCGCCGCACTGCCCTTAEST: gi|86468794|gb|DY235164.1|DY235164
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: GGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAEST: gi|6827379|gb|AW331022.1|AW331022
genomic: GGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTTTTGGATGATTTCACGGNATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGCTCGCCGCACTGCCTTTAEST: gi|32926318|gb|CF031130.1|CF031130
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTCTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATATTCACATGGTTCGCCGCACTGCCCTTAEST: gi|78074964|gb|DV503398.1|DV503398
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAEST: gi|13381842|gb|BG458517.1|BG458517
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAEST: gi|148942558|gb|EC887577.2|EC887577
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATTTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAEST: gi|32942294|gb|CF047113.1|CF047113
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TCTTCTTCTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATATTCACATGGTTCGCCGCACTGCCCTTAEST: gi|211475315|gb|FL222267.1|FL222267
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: CTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAEST: gi|110538710|gb|EE042664.1|EE042664
genomic: CTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: TTTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATTTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAEST: gi|211475316|gb|FL222268.1|FL222268
genomic: TCTTCTTTTTGGATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
EST: GATGATTTCACGGGATTTGAAATCACATATCTTCTTGAG TTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
genomic: GATGATTTCACGGGATTTGAAATCACATATCTTCTTGAGgtaagtattg ... attcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTA
aacaaccaagatatttacttatttgtacctgcgttttccttaactattcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAATATTTTGGGTAGCGCAGGCGATCACTAATGTCATAGTGAAGGACTTCC
ccttaac putative branch site (score: 62)
aagatatttacttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| actttctttttacaccgtaggttctttagttggtgtctgtgtgccaacaaccaagatatttacttatttgtacctgcgttttccttaactattcacgcagTTGCCGGAGCCTTTCAGTTTCATCTTCACATGGTTCGCCGCACTGCCTTTAATATTTTGGGTAGCGCAGGCGATCACTAATGTCATAGTGAAGGACTTCC
- - - - - - - - - - - - - - gttggtg
- - - - - - - - - - - - - - - - - - - - - - caacaac