1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...aaattccctattactaaatatcccacatgattgcaccataagcatataaagtgttattcttaatttgcaattatttttcttgataatttcccctctctagAAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGTCGAAAG
species | Zea mays |
transcript | GRMZM5G885392_T01 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCTGAGACTAAAG AAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGTEST: gi|6827379|gb|AW331022.1|AW331022
genomic: TAAAGCTGAGACTAAAGgtttgttctc ... ccctctctagAAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGT
EST: CCCATCATGACGGATGATGAATTCGATCAACTAAAGCTGAGACTAAAG AAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGTEST: gi|78074964|gb|DV503398.1|DV503398
genomic: CCCATCATGACGGATGATGAATTCGATCAACTAAAGCTGAGACTAAAGgtttgttctc ... ccctctctagAAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGT
EST: TGAATTCGATCAACTAAAGCTGAGACTAAAG AAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGTEST: gi|13381842|gb|BG458517.1|BG458517
genomic: TGAATTCGATCAACTAAAGCTGAGACTAAAGgtttgttctc ... ccctctctagAAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGT
EST: ACCCCATCATGACGGATGATGAATTCGATCAACTAAAGCTGAGACTAAAG AAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGT
genomic: ACCCCATCATGACGGATGATGAATTCGATCAACTAAAGCTGAGACTAAAGgtttgttctc ... ccctctctagAAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGT
ataaagtgttattcttaatttgcaattatttttcttgataatttcccctctctagAAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGTCGAAAG
taatttcccctctct CT-rich tract
ttattcttaatttgca TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattccctattactaaatatcccacatgattgcaccataagcatataaagtgttattcttaatttgcaattatttttcttgataatttcccctctctagAAAGAAGGAAGCGACATTGTACAGGAAGGTCCAAGATGCAGCCTACGGAGTCGAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - -tgattgc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - atttgca